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Series GSE109293 Query DataSets for GSE109293
Status Public on Mar 29, 2019
Title Transcriptome of Dp1Tyb and wild-type mouse embryonic fibroblasts
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Purpose: to identify the effects of the Dp1Tyb mutation on the transcriptome of mouse embryonic fibroblasts
 
Overall design RNAseq libraries were prepared from RNA isolated from mouse embryonic fibroblasts. Libraries were prepared from total RNA using the TruSeq Stranded mRNA Sample Prep Kit (Illumina) by the Advanced Sequencing Facility, The Francis Crick Institute. Libraries were sequenced (100bp paired end) on the Illumina Hiseq 2500.
 
Contributor(s) Anyanwu N, Dinischiotu N, Ahlfors H, Tybulewicz V
Citation(s) 31171815
Submission date Jan 17, 2018
Last update date Jun 24, 2019
Contact name Victor Tybulewicz
E-mail(s) Victor.T@crick.ac.uk
Organization name Francis Crick Institute
Street address 1 Midland Road
City London
ZIP/Postal code NW1 1AT
Country United Kingdom
 
Platforms (1)
GPL17021 Illumina HiSeq 2500 (Mus musculus)
Samples (9)
GSM2936644 WT1_MEF
GSM2936645 WT2_MEF
GSM2936646 WT3_MEF
This SubSeries is part of SuperSeries:
GSE109295 Transcriptome of Dp1Tyb and wild-type mouse embryonic fibroblasts and hippocampus
Relations
BioProject PRJNA430370
SRA SRP131056

Download family Format
SOFT formatted family file(s) SOFTHelp
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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE109293_DESeq2_out_MEF_DS_vs_WT.txt.gz 777.7 Kb (ftp)(http) TXT
GSE109293_vtybulewicz_MEF_normData.txt.gz 939.1 Kb (ftp)(http) TXT
GSE109293_vtybulewicz_MEF_rawData.txt.gz 425.3 Kb (ftp)(http) TXT
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Raw data are available in SRA
Processed data are available on Series record

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