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Series GSE109002 Query DataSets for GSE109002
Status Public on Jan 15, 2018
Title Calorie restriction governs intestinal epithelial regeneration through cell autonomous regulation of mTORC1 in reserve stem cells
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Here, we show that CR enhances regenerative capacity of the intestinal epithelium as a result of increased number of reserve ISCs. We observe that precise regulation of mechanistic target of Rapamycin complex 1 (mTORC1) signaling plays a significant role in regulation of sensitivity of reserve intestinal stem cells to injury and that premature activation of mTORC1 signaling through nutrient modulation, at the time of damage, leads to poor regeneration outcome. These data delineate a critical role for mTORC1 signaling in epithelial regeneration and inform clinical strategies based on nutrient modulation of mTORC1 activity.
 
Overall design mRNA-Sequencing of FACS sorted murine intestinal reserve stem cells (Hopx-CreER) or active stem cells (Lgr5-eGFP-CreER) isolated from mice fed ad libitium or under calorie restriction. Cells were isolated in 5 batches from 10 different animals.
 
Contributor(s) Yousefi M, Lengner C, Berry C
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Submission date Jan 10, 2018
Last update date Mar 25, 2019
Contact name Corbett T Berry
E-mail(s) corbettberry@gmail.com
Organization name University of Pennsylvania
Street address 3800 Spruce St
City Phiadelphia
ZIP/Postal code 19104
Country USA
 
Platforms (1)
GPL19057 Illumina NextSeq 500 (Mus musculus)
Samples (10)
GSM2927890 Lgr5_CR_1
GSM2927891 Lgr5_AL_1
GSM2927892 Lgr5_CR_2
Relations
BioProject PRJNA429386
SRA SRP128654

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE109002_Hopx_Lgr5_TPM.txt.gz 948.7 Kb (ftp)(http) TXT
GSE109002_Hopx_Lgr5_estCounts.txt.gz 1.2 Mb (ftp)(http) TXT
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Raw data are available in SRA
Processed data are available on Series record

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