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Series GSE108995 Query DataSets for GSE108995
Status Public on Sep 10, 2018
Title Profiling of escape kinetics of viruses subjected to RNAi
Organisms Homo sapiens; Canis lupus familiaris; Mesocricetus auratus
Experiment type Expression profiling by high throughput sequencing
Other
Summary To assess how viruses of different genome compositions escape engineered RNAi
 
Overall design mRNA profiles and alignments to viral genomes of BHK-21, RNaseIII-/-, and MDCK cells infected with Sindbis viruses, Semliki Forest viruses, Sendai viruses, or Influenza A viruses that were either a control or subjected to RNAi

mRNA profiles and alignments to viral genomes of 293T and RNaseIII-/- cells infected with Polioviruses viruses that were either a contol or subjected to RNAi
 
Contributor(s) tenOever BR
Citation(s) 30209219
Submission date Jan 10, 2018
Last update date Mar 26, 2019
Contact name Benjamin tenOever
E-mail(s) benjamin.tenoever@mssm.edu
Organization name Ichan School of Medicine at Mount Sinai
Department Microbiology
Street address 1468 Madison Avenue
City New York
State/province NY
ZIP/Postal code 10128
Country USA
 
Platforms (3)
GPL18573 Illumina NextSeq 500 (Homo sapiens)
GPL21400 Illumina NextSeq 500 (Canis lupus familiaris)
GPL24490 Illumina NextSeq 500 (Mesocricetus auratus)
Samples (41)
GSM2927792 SINVsplit-5R-GFPFlag passage 0 replicate 1
GSM2927793 SINVsplit-5R-GFPFlag passage 0 replicate 2
GSM2927794 SINVsplit-5T-GFPFlag passage 0 replicate 1
Relations
BioProject PRJNA429359
SRA SRP128648

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE108995_IAV_PR8_NP5T_reference_viral_genome.rtf.gz 4.8 Kb (ftp)(http) RTF
GSE108995_IAV_PR8_NPGFPt_reference_viral_genome.rtf.gz 4.8 Kb (ftp)(http) RTF
GSE108995_IAV_alignments.xlsx 5.4 Mb (ftp)(http) XLSX
GSE108995_PV_alignments.xlsx 3.5 Mb (ftp)(http) XLSX
GSE108995_SFVG_alignments.xlsx 17.3 Mb (ftp)(http) XLSX
GSE108995_SINV_alignments.xlsx 21.7 Mb (ftp)(http) XLSX
GSE108995_SeV_NP_5R_eGFP_reference_viral_genome.rtf.gz 5.7 Kb (ftp)(http) RTF
GSE108995_SeV_NP_5T_eGFP_reference_viral_genome.rtf.gz 5.7 Kb (ftp)(http) RTF
GSE108995_SeV_alignments.xlsx 20.6 Mb (ftp)(http) XLSX
GSE108995_SinV-NSP4-SGP-split-5R_reference_viral_genome.rtf.gz 4.4 Kb (ftp)(http) RTF
GSE108995_SinV-NSP4-SGP-split-5T_reference_viral_genome.rtf.gz 4.4 Kb (ftp)(http) RTF
GSE108995_pCMV_SFVG_p50R_splitNSP4SGP-5R.fasta_reference_viral_genome.rtf.gz 3.7 Kb (ftp)(http) RTF
GSE108995_pCMV_SFVG_p50R_splitNSP4SGP-5T_reference_viral_genome.rtf.gz 3.7 Kb (ftp)(http) RTF
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Raw data are available in SRA
Processed data are available on Series record
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