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Series GSE108872 Query DataSets for GSE108872
Status Public on Apr 11, 2018
Title Tet1 and Tet2 Maintain Mesenchymal Stem Cell Homeostasis via demethylation of P2rX7 promoter
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Ten-eleven translocation (Tet) family-mediated DNA oxidation represents a novel epigenetic modification capable of converting 5-methylcytosine (5-mC) to 5-hydroxymethylcytosine (5-hmC) to regulate various biological processes. However, it is unknown whether the Tet family affects mesenchymal stem cells (MSCs) or the skeletal system. Here we show that depletion of Tet1 and Tet2 resulted in impaired self-renewal and differentiation of bone marrow MSCs (BMMSCs) and a significant osteopenia phenotype. Mechanistically, Tet1 and Tet2 deficiency reduced demethylation of the P2rX7 promoter and thus downregulated exosome release, leading to intracellular accumulation of miR-297a-5p, miR-297b-5p, and miR-297c-5p. These miRNAs inhibited Runx2 signaling to impair BMMSC function. We show that overexpression of P2rX7 consistently rescued the impaired BMMSCs and osteoporotic phenotype in Tet1 and Tet2 double knockout mice. These results indicate that Tet1 and Tet2 play a critical role in maintaining BMMSC and bone homeostasis through epigenetic regulation of P2rX7 to control exosome and miRNA release. This newly identified Tet/P2rX7/Runx2 cascade may serve as a target for the development of novel therapies for osteopenia disorders.
 
Overall design Compare the global gene expression of three control BMMSCs sample and three Tet1 siRNA and three Tet2 siRNA combinational treated-BMMSCs
 
Contributor(s) Yang R, Yu T, Shi S
Citation(s) 29858571
Submission date Jan 08, 2018
Last update date Mar 21, 2019
Contact name Ruili Yang
E-mail(s) ruiliyangabc@163.com
Organization name Peking University
Street address 22# South Zhongguancun Ave
City Beijing
ZIP/Postal code 10081
Country China
 
Platforms (1)
GPL17021 Illumina HiSeq 2500 (Mus musculus)
Samples (6)
GSM2915198 Control 1
GSM2915199 Control 2
GSM2915200 Control 3
Relations
BioProject PRJNA428994
SRA SRP128561

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE108872_ControlandsiTet1and2_RPKM.txt.gz 502.9 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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