 |
 |
GEO help: Mouse over screen elements for information. |
|
| Status |
Public on Sep 17, 2018 |
| Title |
Paired-cell sequencing enables spatial gene expression mapping of liver endothelial cells |
| Organism |
Mus musculus |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
We molecularly characterized thousands of liver endothelial cells and immune cells using scRNAseq. We next sequenced pairs of hepatocytes and attached endothelial cells, and used the hepatocyte genes to infer the liver lobule coordinates of these pairs, thus obtaining the global zonation patterns of endothelial genes.
|
| |
|
| Overall design |
mRNA profiles from single cells and paired-cells extracted from mouse liver were sequenced in several batches in an Illumina NextSeq.
|
| |
|
| Contributor(s) |
Itzkovitz S, Amit I, Bahar Halpern K, Shenhav R, Massalha H, Toth B, Egozi A, Medgalia C, Moor AE, David E, Massasa EE, Giladi A, Porat Z |
| Citation(s) |
30222169 |
| |
| Submission date |
Dec 27, 2017 |
| Last update date |
Mar 25, 2019 |
| Contact name |
Keren Bahar-Halpern |
| Organization name |
Weizmann Institute
|
| Lab |
Itzkovitz
|
| Street address |
Herzl St 234
|
| City |
Rehovot |
| ZIP/Postal code |
7610001 |
| Country |
Israel |
| |
|
| Platforms (1) |
| GPL19057 |
Illumina NextSeq 500 (Mus musculus) |
|
| Samples (28)
|
|
| Relations |
| BioProject |
PRJNA427695 |
| SRA |
SRP127619 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE108561_NPC_umitab.txt.gz |
3.2 Mb |
(ftp)(http) |
TXT |
| GSE108561_PairedCells_umitab.txt.gz |
12.1 Mb |
(ftp)(http) |
TXT |
| GSE108561_experimental_design.xlsx |
508.0 Kb |
(ftp)(http) |
XLSX |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
|
|
|
|
 |
Less...
More...