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Series GSE107461 Query DataSets for GSE107461
Status Public on Feb 27, 2018
Title Direct reprogramming of spiral ganglion non-neuronal cells into neurons: Towards ameliorating sensorineural hearing loss by gene therapy
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary The loss of primary auditory neurons (PANs) leads to permanent hearing impairment since they are incapable of regenerating. Spiral ganglion non-neuronal cells (SGNNCs), comprised mainly of glia, are resident within the modiolus and continue to survive after PAN loss. These attributes make SGNNCs an excellent target for replacing damaged PANs through cellular reprogramming. We used the neurogenic pioneer transcription factor Ascl1 and the auditory neuron differentiation factor NeuroD1 to reprogram SGNNCs into induced neurons (iNs). The overexpression of both Ascl1 and NeuroD1 in vitro generated iNs at high efficiency and these iNs expressed several key markers of neuron identity. Transcriptome analyses revealed that iNs displayed a transcriptome profile resembling that of endogenous PANs, demonstrating that PAN-like neurons can be generated from endogenous SGNNCs. This work suggests that gene therapy can be a viable strategy to treat sensorineural hearing loss caused by degeneration of PANs.
 
Overall design P1 Tau-EGFP cochleae were dissected and isolated SGs were sorted by EGFP fluorescence with flow cytometer. EGFP positive fraction contained endogenous PANs, and EGFP negative fraction containing SGNNCs. SGNNCs were cultured and transfected with transcription factors or control vector - induced neurons (iN) or vector control (VC) respectively. PANs, iNs, and VC cells were collected and RNA extracted for transcriptome analysis.
 
Contributor(s) Noda T, Amemiya Y, Nogami J, Ohkawa Y, Dabdoub A
Citation(s) 29492404
Submission date Nov 28, 2017
Last update date May 15, 2019
Contact name Yutaka Amemiya
E-mail(s) yamemiya@sri.utoronto.ca
Organization name Sunnybrook Research Institute
Lab Genomics Core Facility
Street address 2075 Bayview Ave.
City Toronto
State/province ON
ZIP/Postal code M4N3M5
Country Canada
 
Platforms (1)
GPL17021 Illumina HiSeq 2500 (Mus musculus)
Samples (9)
GSM2867901 Endogenous1
GSM2867902 Endogenous2
GSM2867903 Endogenous3
Relations
BioProject PRJNA420108
SRA SRP125778

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Supplementary file Size Download File type/resource
GSE107461_srigcf_TPM_Endogenous_DoubleiN_Vector.txt.gz 585.9 Kb (ftp)(http) TXT
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Raw data are available in SRA
Processed data are available on Series record

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