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Series GSE106554 Query DataSets for GSE106554
Status Public on Apr 20, 2020
Title Systemic inflammation drives rapid conversion of conventional CD4+ T cells to Treg in vivo
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary The immune system faces a task that approximates cognition in its complexity as it processes a multitude of intrinsic and extrinsic signals and integrates these into responses of the appropriate class, specificity, magnitude, and duration for a given threat, with the host’s life often depending on the outcome. CD4+ T lymphocytes occupy a unique role in the generation and regulation of immunity within this context and influence multiple innate and adaptive cell types. With respect to CD8+ cytotoxic T lymphocytes (CTL), CD4+ T cells function early in the response as ‘helpers’ (TH) to increase its magnitude and functionality, and later as regulatory cells (Treg) to restore homeostasis and avoid immune pathology. Using a Listeria monocytogenes (Lm) infection model, we probed whether the conditions of initial pathogen encounter could influence the generation of TH versus Treg. At low dose infection, CD4+ T cells ‘help’ CTLs via CD40-CD40L signaling, while high dose infection induces rapid polyclonal conversion to functional FoxP3+CD25+ Treg within 24 hours. These findings resolve long-standing questions regarding the requirement for TH and reveal a remarkable degree of plasticity in the function of CD4+ T cells, which can be quickly converted to Treg in vivo in response to acute inflammation.
 
Overall design Differential gene expression analysis of total RNA isolated from splenic CD4+eGFP− (Tconv) and CD4+eGFP+ (Treg) from Foxp3eGFP mice following low dose and high dose Lm ΔactA-Ova infections.
 
Contributor(s) Dolina JS, Lee J, Labarta-Bajo L, Kannan S, Greenbaum JA, Mikulski Z, Bahia El Idrissi N, Pont MJ, Rosales SL, Seumois G, Vijayanand P, Croft M, Schoenberger SP
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Submission date Nov 06, 2017
Last update date Apr 21, 2020
Contact name Joseph Samuel Dolina
Organization name La Jolla Institute for Allergy and Immunology
Street address 9420 Athena circle
City San Diego
State/province California
ZIP/Postal code 92037
Country USA
 
Platforms (1)
GPL17021 Illumina HiSeq 2500 (Mus musculus)
Samples (12)
GSM2842608 127_RSS31_JoDo01_Naive_M_neg_N720_S510
GSM2842609 128_RSS31_JoDo01_Naive_F_neg_N720_S511
GSM2842610 129_RSS31_JoDo01_LD_D1_M_neg_N721_S502
Relations
BioProject PRJNA417240
SRA SRP124228

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE106554_All_HTSeq_Counts.tsv.gz 298.4 Kb (ftp)(http) TSV
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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