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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Oct 25, 2020 |
| Title |
mRNA-seq analyses for the differentially expressed genes (DEGs) among Con, NF VM-astrocytes, Ctx-astrocytes, and control Ctx-NPCs |
| Organism |
Mus musculus |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
To gain further molecular insight into the observed astrocyte functions, we performed RNA-sequencing (RNA-seq) analysis of the differentiated Ctx-NPCs (control), Ctx-astrocytes and VM-astrocytes used in the co-culture and CM experiments. The genes that are differentially expressed (DEGs) in Ctx-astrocytes compared to differentiated Ctx-NPCs (FPKM>1, log2>1) significantly overlapped with DEGs in VM-astrocytes compared to differentiated Ctx-NPCs
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| Overall design |
5 mouse sample: mNPC-CTX, mAST-VMC, mAST-VMNF, mAST-CTX, mAST-VM
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| Contributor(s) |
Lee S, Song J |
| Citation(s) |
33646633, 35858361 |
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| Submission date |
Oct 26, 2017 |
| Last update date |
Aug 02, 2022 |
| Contact name |
Jae-Jin Song |
| E-mail(s) |
jaejiniman@naver.com
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| Organization name |
Hanyang university
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| Department |
Hanyang Biomedical Research Institute
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| Street address |
222, Wangsimni-ro
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| City |
Seoul |
| ZIP/Postal code |
KS013 |
| Country |
South Korea |
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| Platforms (1) |
| GPL13112 |
Illumina HiSeq 2000 (Mus musculus) |
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| Samples (5)
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| Relations |
| BioProject |
PRJNA415941 |
| SRA |
SRP121646 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE106216_RAW.tar |
1.2 Mb |
(http)(custom) |
TAR (of TXT) |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
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