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Series GSE105530

Query DataSets for GSE105530

Status

Public on Oct 23, 2017

Title

ChIP-seq from K562 (ENCSR429XTR)

Project

ENCODE

Organism

Homo sapiens

Experiment type

Genome binding/occupancy profiling by high throughput sequencing

Summary

TARDBP ChIP-seq in K562

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf

Overall design

https://www.encodeproject.org/ENCSR429XTR/

Citation(s)

22955616

BioProject

PRJNA63443

Submission date

Oct 20, 2017

Last update date

Jul 25, 2021

Contact name

ENCODE DCC

E-mail(s)

encode-help@lists.stanford.edu

Organization name

ENCODE DCC

Street address

300 Pasteur Dr

City

Stanford

State/province

ZIP/Postal code

94305-5120

Country

USA

Platforms (1)

GPL11154

Illumina HiSeq 2000 (Homo sapiens)

Samples (2)

GSM2827255	ChIP-seq from K562 (ENCLB303FFT)
GSM2827256	ChIP-seq from K562 (ENCLB583IXZ)

Download family	Format
SOFT formatted family file(s)	SOFT
MINiML formatted family file(s)	MINiML
Series Matrix File(s)	TXT

Supplementary file	Size	Download	File type/resource
GSE105530_ENCFF003EQP_optimal_idr_thresholded_peaks_hg19.bigBed	301.5 Kb	(ftp)(http)	BIGBED
GSE105530_ENCFF021QCU_optimal_idr_thresholded_peaks_GRCh38.bigBed	383.7 Kb	(ftp)(http)	BIGBED
GSE105530_ENCFF059VEO_conservative_idr_thresholded_peaks_hg19.bed.gz	138.4 Kb	(ftp)(http)	BED
GSE105530_ENCFF134EIU_fold_change_over_control_GRCh38.bigWig	668.3 Mb	(ftp)(http)	BIGWIG
GSE105530_ENCFF282WIP_conservative_idr_thresholded_peaks_GRCh38.bed.gz	148.8 Kb	(ftp)(http)	BED
GSE105530_ENCFF285OCH_peaks_GRCh38.bed.gz	6.5 Mb	(ftp)(http)	BED
GSE105530_ENCFF295PNX_peaks_GRCh38.bigBed	12.4 Mb	(ftp)(http)	BIGBED
GSE105530_ENCFF299MKR_signal_p-value_GRCh38.bigWig	804.6 Mb	(ftp)(http)	BIGWIG
GSE105530_ENCFF448YOS_optimal_idr_thresholded_peaks_GRCh38.bed.gz	157.8 Kb	(ftp)(http)	BED
GSE105530_ENCFF700XRO_peaks_hg19.bed.gz	6.5 Mb	(ftp)(http)	BED
GSE105530_ENCFF794XXK_fold_change_over_control_hg19.bigWig	652.7 Mb	(ftp)(http)	BIGWIG
GSE105530_ENCFF799NWP_signal_p-value_hg19.bigWig	885.8 Mb	(ftp)(http)	BIGWIG
GSE105530_ENCFF862VLY_conservative_idr_thresholded_peaks_GRCh38.bigBed	369.6 Kb	(ftp)(http)	BIGBED
GSE105530_ENCFF905VXX_optimal_idr_thresholded_peaks_hg19.bed.gz	145.1 Kb	(ftp)(http)	BED
GSE105530_ENCFF919ERM_peaks_hg19.bigBed	12.3 Mb	(ftp)(http)	BIGBED
GSE105530_ENCFF967VHN_conservative_idr_thresholded_peaks_hg19.bigBed	292.5 Kb	(ftp)(http)	BIGBED
GSE105530_RAW.tar	3.1 Gb	(http)(custom)	TAR (of BED, BIGBED, BIGWIG, TXT)
SRA Run Selector
Raw data provided as supplementary file
Processed data provided as supplementary file
Processed data are available on Series record