NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Series GSE104828 Query DataSets for GSE104828
Status Public on May 01, 2018
Title TET2 regulates osteoclast differentiation by interacting with RUNX1 and maintaining genomic 5-hydroxymethylcytosine
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Methylation profiling by high throughput sequencing
Summary In this study we show that Tet2 helps regulate the differentiation of macrophages to osteoclases
 
Overall design Examination of transcriptome and hydroxymethylome in WT and Tet2 knockout Macrophages
 
Contributor(s) Xu M, Sant DW
Citation(s) 29908294
Submission date Oct 11, 2017
Last update date Jul 25, 2021
Contact name David Wayne Sant
E-mail(s) dwsant@noordacom.org
Phone 3853758672
Organization name Noorda College of Osteopathic Medic
Department Biomedical Informatics
Lab Kyle Bills
Street address 1712 South East Bay Blvd, Building 5 Suite 300
City Provo
State/province UT
ZIP/Postal code 84606
Country USA
 
Platforms (1)
GPL18480 Illumina HiSeq 1500 (Mus musculus)
Samples (9)
GSM2808464 KO_1 RNA
GSM2808465 KO_2 RNA
GSM2808466 WT_1 RNA
Relations
BioProject PRJNA413945
SRA SRP119769

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE104828_RAW.tar 1.5 Mb (http)(custom) TAR (of CSV)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap