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Series GSE104591 Query DataSets for GSE104591
Status Public on Dec 03, 2018
Title Integrated in vivo quantitative proteomics and nutrient tracing reveals age-related metabolic rewiring of pancreatic beta-cell function
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Aging is associated with fundamental changes in pancreatic β-cell physiology; yet, the mechanisms that drive these age-related changes are poorly understood. We performed comprehensive proteomic profiling of pancreatic islets from adolescent and old mice. The analysis revealed striking differences in abundance of enzymes controlling glucose metabolism not reflected at the transcript level. We show that these changes in protein abundance are associated with increased activity of the amplifying pathway of insulin secretion. The amplifying pathway stimulates insulin secretion through coupling factors produced during glucose metabolism. Nutrient tracing and targeted metabolomics demonstrate accelerated accumulation of glucose-derived metabolites and coupling factors in aged islets, indicating that age-related changes in glucose metabolism contribute to the improved response of β-cells to glucose with age. Together, our study provides the first in-depth characterization of changes in the islet proteome during aging and establishes metabolic rewiring as an important mechanism for age-associated changes in β-cell function.
 
Overall design RNA-sequencing of 3 biological replicates each of islets pooled from young 4-week-old C57Bl6 mice and old 1-year-old mice
 
Contributor(s) Benthuysen JR, Sander M
Citation(s) 30517875
Submission date Oct 04, 2017
Last update date Jul 25, 2021
Contact name Maike Sander
E-mail(s) masander@ucsd.edu
Organization name UC San Diego
Street address 2880 Torrey Pines Scenic Dr.
City La Jolla
State/province CA
ZIP/Postal code 92037
Country USA
 
Platforms (1)
GPL17021 Illumina HiSeq 2500 (Mus musculus)
Samples (6)
GSM2803883 1-year-old mouse islets rep1
GSM2803884 1-year-old mouse islets rep2
GSM2803885 1-year-old mouse islets rep3
Relations
BioProject PRJNA413145
SRA SRP119400

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE104591_RAW.tar 798.3 Mb (http)(custom) TAR (of BIGWIG)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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