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Series GSE104493 Query DataSets for GSE104493
Status Public on Nov 11, 2021
Title Benchmark Data for scPLATE-Seq
Organisms Homo sapiens; Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Generate benchmark data for scPLATE-Seq
 
Overall design Obtain 1 RNA-Seq profile and 192 scRNA-Seq profiles for HEK293 cells, 96 scRNA-Seq profiles for U87 cells as well as 384 scRNA-Seq profiles for U87-3T3 cell mixture.
 
Contributor(s) Worley J, Ding H, Bush E, Califano A, Sims P
Citation missing Has this study been published? Please login to update or notify GEO.
NIH grant(s)
Grant ID Grant title Affiliation Name
R35 CA197745 Elucidating the dependencies of tumor initiating and drug-resistant niches in human malignancies by genome- wide molecualr profiling of single cells Trustees of Columbia University in the City of New York ANDREA CALIFANO
S10 OD020056 BD Biosciences Influx Trustees of Columbia University in the City of New York HANS-WILLEM E SNOECK
P30 CA013696 Cancer Center Support Grant Trustees of Columbia University in the City of New York Cory Abate-Shen
P30 CA013696 Cancer Center Support Grant Trustees of Columbia University in the City of New York MITCHELL C. BENSON
P30 CA013696 Cancer Center Support Grant Trustees of Columbia University in the City of New York STEPHEN G EMERSON
Submission date Oct 02, 2017
Last update date Nov 11, 2021
Contact name Hongxu Ding
E-mail(s) hongxuding@arizona.edu
Organization name University of Arizona
Street address The University of Arizona
City Tucson
State/province AZ
ZIP/Postal code 85721
Country USA
 
Platforms (2)
GPL18573 Illumina NextSeq 500 (Homo sapiens)
GPL19415 Illumina NextSeq 500 (Homo sapiens; Mus musculus)
Samples (769)
GSM2801667 HEK293 RNA-Seq HEK293_BK
GSM2801668 HEK293 scRNA-Seq Plate1 HEK293_SC_P1a1
GSM2801669 HEK293 scRNA-Seq Plate1 HEK293_SC_P1a10
Relations
BioProject PRJNA412850
SRA SRP119249

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE104493_HsMm.csv.gz 6.8 Kb (ftp)(http) CSV
GSE104493_counts.csv.gz 2.7 Mb (ftp)(http) CSV
GSE104493_umi0.csv.gz 1.5 Mb (ftp)(http) CSV
GSE104493_umi1.csv.gz 1.4 Mb (ftp)(http) CSV
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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