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Series GSE103849 Query DataSets for GSE103849
Status Public on Nov 07, 2017
Title UTX guided neural crest function underlies craniofacial features of Kabuki Syndrome
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Summary We report RNA-seq and ChIP-seq from flow-sorted E12.5 primary mouse neural crest from WT and UTX knockout embryos
 
Overall design RNA-seq as well as H3K27me3, H3K4me3, and UTX ChIP-seq in WT and UTX knockout neural crest
 
Contributor(s) Shpargel KB, Magnuson T
Citation(s) 29073101
Submission date Sep 14, 2017
Last update date Jul 25, 2021
Contact name Karl B. Shpargel
E-mail(s) kshpargel@yahoo.com
Organization name University of North Carolina
Department Genetics
Street address 120 Mason Farm Road
City Chapel Hill
State/province NC
ZIP/Postal code 27599
Country USA
 
Platforms (1)
GPL17021 Illumina HiSeq 2500 (Mus musculus)
Samples (35)
GSM2784601 wt1_rna
GSM2784602 wt2_rna
GSM2784603 wt_merged_rna
Relations
BioProject PRJNA407288
SRA SRP117662

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE103849_RAW.tar 9.4 Gb (http)(custom) TAR (of BROADPEAK, BW)
GSE103849_h3k27me3_macs2_counts.txt.gz 2.0 Mb (ftp)(http) TXT
GSE103849_h3k4me3_macs2_counts.txt.gz 3.2 Mb (ftp)(http) TXT
GSE103849_rna_counts.txt.gz 250.3 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record

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