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GEO accession:
Series GSE103590
Query DataSets for GSE103590
Status
Public on Apr 24, 2018
Title
NOTCH-mediated non-cell autonomous regulation of chromatin structure during senescence
Organism
Homo sapiens
Experiment type
Genome binding/occupancy profiling by high throughput sequencing
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
29743479
Submission date
Sep 07, 2017
Last update date
Jul 25, 2021
Contact name
Shamith Samarajiwa
Organization name
Imperial College London
Department
Genetics and Genomics Section Department of Metabolism, Digestion and Reproduction
Lab
Computational Biology & Data Science
Street address
ICTEM Building, Hammersmith Campus, Du Cane Road,
City
London
ZIP/Postal code
W12 0NN
Country
United Kingdom
Platforms (2)
GPL16791
Illumina HiSeq 2500 (Homo sapiens)
GPL18573
Illumina NextSeq 500 (Homo sapiens)
Samples (80)
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More...
GSM2774968
ATAC_Growing_Rep1
GSM2774969
ATAC_Growing_Rep2
GSM2774970
ATAC_Growing_Rep3
GSM2774971
ATAC_Growing_Rep4
GSM2774972
ATAC_RIS_Rep1
GSM2774973
ATAC_RIS_Rep2
GSM2774974
ATAC_RIS_Rep3
GSM2774975
ATAC_NIS_Rep1
GSM2774976
ATAC_NIS_Rep2
GSM2774977
ATAC_NIS_Rep3
GSM2774978
ATAC_N+RIS_Rep1
GSM2774979
ATAC_N+RIS_Rep2
GSM2774980
ATAC_N+RIS_Rep3
GSM2774981
ATAC_CoCulture_RIS_MCF7_Rep1
GSM2774982
ATAC_CoCulture_RIS_MCF7_Rep2
GSM2774983
ATAC_CoCulture_RIS_A549_Rep1
GSM2774984
ATAC_CoCulture_RIS_A549_Rep2
GSM2774985
ATAC_CoCulture_RIS_Hep3B_Rep1
GSM2774986
ATAC_CoCulture_RIS_Hep3B_Rep2
GSM2774987
ATAC_shHMGA1+RIS_Rep1
GSM2774988
ATAC_shHMGA1+RIS_Rep2
GSM2774989
ATAC_shHMGA1+RIS_Rep3
GSM2774990
ATAC_shHMGA1+RIS_Rep4
GSM2774991
ATAC_shHMGA1+RIS_Rep5
GSM2774992
ChIP_Growing_H3K27Ac_Rep1
GSM2774993
ChIP_Growing_H3K27Ac_Rep2
GSM2774994
ChIP_Growing_H3K27Ac_Rep3
GSM2774995
ChIP_Growing_H3K27Ac_Rep4
GSM2774996
ChIP_RIS_H3K27Ac_Rep1
GSM2774997
ChIP_RIS_H3K27Ac_Rep2
GSM2774998
ChIP_RIS_H3K27Ac_Rep3
GSM2774999
ChIP_RIS_H3K27Ac_Rep4
GSM2775000
ChIP_Growing_H3K4me1_Rep1
GSM2775001
ChIP_Growing_H3K4me1_Rep2
GSM2775002
ChIP_Growing_H3K4me1_Rep3
GSM2775003
ChIP_Growing_H3K4me1_Rep4
GSM2775004
ChIP_RIS_H3K4me1_Rep1
GSM2775005
ChIP_RIS_H3K4me1_Rep2
GSM2775006
ChIP_RIS_H3K4me1_Rep3
GSM2775007
ChIP_RIS_H3K4me1_Rep4
GSM2775008
Input_Growing_H3K27Ac_Rep1
GSM2775009
Input_Growing_H3K27Ac_Rep2
GSM2775010
Input_Growing_H3K27Ac_Rep3
GSM2775011
Input_Growing_H3K27Ac_Rep4
GSM2775012
Input_RIS_H3K27Ac_Rep1
GSM2775013
Input_RIS_H3K27Ac_Rep2
GSM2775014
Input_RIS_H3K27Ac_Rep3
GSM2775015
Input_RIS_H3K27Ac_Rep4
GSM2775016
Input_Growing_H3K4me1_Rep1
GSM2775017
Input_Growing_H3K4me1_Rep2
GSM2775018
Input_Growing_H3K4me1_Rep3
GSM2775019
Input_Growing_H3K4me1_Rep4
GSM2775020
Input_RIS_H3K4me1_Rep1
GSM2775021
Input_RIS_H3K4me1_Rep2
GSM2775022
Input_RIS_H3K4me1_Rep3
GSM2775023
Input_RIS_H3K4me1_Rep4
GSM3095576
Growing_Vector_R1
GSM3095577
Growing_Vector_R2
GSM3095578
Growing_Vector_R3
GSM3095579
Growing_Vector_R4
GSM3095580
Growing_Vector_R5
GSM3095581
Growing_Vector_R6
GSM3095582
Growing_shHMGA1_R1
GSM3095583
Growing_shHMGA1_R2
GSM3095584
Growing_shHMGA1_R3
GSM3095585
Growing_shHMGA1_R4
GSM3095586
Growing_shHMGA1_R5
GSM3095587
Growing_shHMGA1_R6
GSM3095588
RIS_Vector_R1
GSM3095589
RIS_Vector_R2
GSM3095590
RIS_Vector_R3
GSM3095591
RIS_Vector_R4
GSM3095592
RIS_Vector_R5
GSM3095593
RIS_Vector_R6
GSM3095594
RIS_shHMGA1_R1
GSM3095595
RIS_shHMGA1_R2
GSM3095596
RIS_shHMGA1_R3
GSM3095597
RIS_shHMGA1_R4
GSM3095598
RIS_shHMGA1_R5
GSM3095599
RIS_shHMGA1_R6
This SuperSeries is composed of the following SubSeries:
GSE103588
NOTCH-mediated non-cell autonomous regulation of chromatin structure during senescence [ATAC-Seq]
GSE103589
NOTCH-mediated non-cell autonomous regulation of chromatin structure during senescence [ChIP-Seq]
GSE113060
NOTCH-mediated non-cell autonomous regulation of chromatin structure during senescence [RNA-Seq]
Relations
BioProject
PRJNA402006
Download family
Format
SOFT formatted family file(s)
SOFT
MINiML formatted family file(s)
MINiML
Series Matrix File(s)
TXT
Supplementary file
Size
Download
File type/resource
GSE103590_RAW.tar
11.9 Gb
(http)
(custom)
TAR (of BEDGRAPH, NARROWPEAK, TXT)
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