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Series GSE103194 Query DataSets for GSE103194
Status Public on Aug 29, 2017
Title Reduced Slc1a1 expression is associated with neuroinflammation and impaired sensorimotor gating and cognitive performance in mice: implications for schizophrenia
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary We characterized the in vivo and in vitro consequences of reduced expression of Slc1a1 in mice. Heterozygous (HET) Slc1a1+/- mice, which model the hemi-deletion we found in human subjects with schizophrenia, were examined in a series of behavioral, anatomical and biochemical assays. Knockout (KO) mice were also included in the behavioral studies for comparative purposes. Both HET and KO mice exhibited evidence of increased anxiety-like behavior, impaired working memory, decreased exploratory activity and impaired sensorimotor gating, but no changes in overall locomotor activity compared to wildtype (WT) mice. The magnitude of changes was approximately equivalent in the HET and KO mice suggesting a dominant effect of the haploinsufficiency. Whole transcriptome RNA-Seq analysis detected expression changes of genes and pathways involved in cytokine signaling and synaptic functions in both brain and blood of the HET mice compared to WT mice.
 
Overall design mRNA profiles of the whole brain and whole blood of young adult wild type (WT) Slc1a1 +/+ and heterozygous (HET) Slc1a1 +/- mice were generated by stranded RNA-seq, with n = 5 per genotype per tissue, using an Illumina NextSeq500.
 
Contributor(s) Middleton FA, Afshari P
Citation(s) 28886095
Submission date Aug 28, 2017
Last update date Jul 25, 2021
Contact name Frank A Middleton
E-mail(s) middletf@upstate.edu
Phone 315-464-7721
Organization name SUNY Upstate Medical Univ
Department Neuroscience and Physiology
Street address 505 Irving Avenue
City Syracuse
State/province NY
ZIP/Postal code 13210
Country USA
 
Platforms (1)
GPL19057 Illumina NextSeq 500 (Mus musculus)
Samples (20)
GSM2757274 BrainHET1
GSM2757275 BrainHET2
GSM2757276 BrainHET3
Relations
BioProject PRJNA400478
SRA SRP116334

Download family Format
SOFT formatted family file(s) SOFTHelp
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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE103194_RAW.tar 3.2 Mb (http)(custom) TAR (of TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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