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Series GSE103082 Query DataSets for GSE103082
Status Public on Feb 27, 2018
Title Resistance to BET inhibitor leads to new therapeutic vulnerabilities in castration resistant prostate cancer
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary BRD4 plays a major role in the transcription networks orchestrated by androgen receptor (AR) in castration resistant prostate cancer (CRPC) cells. Bromodomain and extraterminal protein (BET) inhibitors displace BRD4 protein from chromatin, resulting in the inhibition of oncogenic transcriptional programs. Several BET inhibitors (BETi) are currently being evaluated in clinical trials for a variety of malignancies, including CRPC. Here we describe a general mechanism of acquired resistance to BETi due to modulation of cellular pathways that are amenable to targeted therapies in CRPC cells. BETi resistant CRPC cells displayed cross resistance to a variety of BETi in the absence of gatekeeper mutations or persistent drug pump activation. Resistant cells exhibited reduced chromatin bound BRD4, and were less sensitive to Proteolysis Targeting Chimeric (PROTAC) -mediated degradation or genetic knockdown, suggesting a BRD4-independent transcription program. Transcriptomic analysis revealed reactivation of AR-signaling due to CDK9-mediated serine-81 phosphorylation of AR, with a consequent increase in sensitivity to CDK9 inhibitors and enzalutamide in BETi resistant cells. Additionally, increased DNA damage associated with PRC2-mediated transcriptional silencing of DNA damage response (DDR) genes was observed due to the loss of BRD4 from their proximal promoter regions in the resistant cells, leading to PARP inhibitor sensitivity. Collectively, our results identify the therapeutic limitation of BETi as a monotherapy in CRPC. However, data showing the reactivation of AR-signaling and increased DNA damage in the BETi resistant cells provide unique opportunities for combination therapies in managing CRPC.
 
Overall design Gene epxression by RNAseq in the parental vs BETi resistant 22RV1 and LNCaP cells
 
Contributor(s) Asangani IA
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Submission date Aug 24, 2017
Last update date Jul 25, 2021
Contact name Irfan A Asangani
E-mail(s) asangani@mail.med.upenn.edu
Organization name University of Pennsylvania
Department Cancer Biology
Lab Asangani
Street address 421 Curie Blvd
City Philadelphia
State/province Pennylvania
ZIP/Postal code 19104
Country USA
 
Platforms (1)
GPL18573 Illumina NextSeq 500 (Homo sapiens)
Samples (6)
GSM2753412 22RV1
GSM2753413 22RV1 BETi Resistant Pool 1
GSM2753414 22RV1 BETi Resistant Pool 2
Relations
BioProject PRJNA400161
SRA SRP116233

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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE103082_RAW.tar 4.2 Mb (http)(custom) TAR (of FPKM_TRACKING)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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