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Series GSE102349 Query DataSets for GSE102349
Status Public on Aug 09, 2017
Title Genomic Analysis of Nasopharyngeal Carcinoma Reveals TME-based Subtypes
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary We performed an integrated genomic analysis of NPC using a large clinical cohort of treatment-naïve tumor specimens which identified three gene expression-based subtypes differing in their pattern of immune and stromal gene expression.
 
Overall design mRNA-sequencing to quantify genome-wide transcript levels in 113 fresh, treatment-naive undifferentiated nasopharyngeal carcinoma tumors.
 
Contributor(s) MacIsaac KD, Yao Y
Citation(s) 28851814
Submission date Aug 08, 2017
Last update date May 15, 2019
Contact name Kenzie MacIsaac
E-mail(s) kenzie.macisaac@gmail.com
Phone 617-992-3217
Organization name Merck Research Labs
Department Genetics and Pharmacogenomics
Street address 33 Avenue Louis Pasteur
City Boston
State/province MA
ZIP/Postal code 02115
Country USA
 
Platforms (1)
GPL11154 Illumina HiSeq 2000 (Homo sapiens)
Samples (113)
GSM2735202 Patient 264
GSM2735203 Patient 4
GSM2735204 Patient 78
Relations
BioProject PRJNA397538
SRA SRP115011

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE102349_NPC_mRNA_processed.txt.gz 5.9 Mb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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