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GEO accession:
Series GSE101975
Query DataSets for GSE101975
Status
Public on Sep 29, 2017
Title
ARID1A and ARID1B loss in HCT116 and TOV21G cells
Organism
Homo sapiens
Experiment type
Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Other
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
28967863
Submission date
Jul 27, 2017
Last update date
Nov 17, 2022
Contact name
Diana C. Hargreaves
E-mail(s)
dhargreaves@salk.edu
Organization name
The Salk Institute for Biological Studies
Street address
10010 North Torrey Pines Road
City
San Diego
State/province
CA
ZIP/Postal code
92037
Country
USA
Platforms (2)
GPL16791
Illumina HiSeq 2500 (Homo sapiens)
GPL18573
Illumina NextSeq 500 (Homo sapiens)
Samples (74)
Less...
More...
GSM2719724
HCT116 ATAC-seq-WT-Rep1
GSM2719725
HCT116 ATAC-seq-WT-Rep2
GSM2719726
HCT116 ATAC-seq-ARID1BKD-Rep1
GSM2719727
HCT116 ATAC-seq-ARID1BKD-Rep2
GSM2719728
HCT116 ARID1A-/- ATAC-seq-ARID1AKO-Rep1
GSM2719729
HCT116 ARID1A-/- ATAC-seq-ARID1AKO-Rep2
GSM2719730
HCT116 ARID1A-/- ATAC-seq-ARID1AKO-ARID1BKD2-Rep1
GSM2719731
HCT116 ARID1A-/- ATAC-seq-ARID1AKO-ARID1BKD2-Rep2
GSM2719732
HCT116 H3K4me-ChIP-seq-WT-Rep1
GSM2719733
HCT116 H3K4me-ChIP-seq-WT-Rep2
GSM2719734
HCT116 H3K4me-ChIP-seq-ARID1BKD-Rep1
GSM2719735
HCT116 H3K4me-ChIP-seq-ARID1BKD-Rep2
GSM2719736
HCT116 ARID1A-/- H3K4me-ChIP-seq-ARID1AKO-Rep1
GSM2719737
HCT116 ARID1A-/- H3K4me-ChIP-seq-ARID1AKO-Rep2
GSM2719738
HCT116 ARID1A-/- H3K4me-ChIP-seq-ARID1AKO-ARID1BKD-Rep1
GSM2719739
HCT116 ARID1A-/- H3K4me-ChIP-seq-ARID1AKO-ARID1BKD-Rep2
GSM2719740
HCT116 H3K4me3-ChIP-seq-WT-Rep1
GSM2719741
HCT116 H3K4me3-ChIP-seq-WT-Rep2
GSM2719742
HCT116 H3K4me3-ChIP-seq-ARID1BKD-Rep1
GSM2719743
HCT116 H3K4me3-ChIP-seq-ARID1BKD-Rep2
GSM2719744
HCT116 ARID1A-/- H3K4me3-ChIP-seq-ARID1AKO-Rep1
GSM2719745
HCT116 ARID1A-/- H3K4me3-ChIP-seq-ARID1AKO-Rep2
GSM2719746
HCT116 ARID1A-/- H3K4me3-ChIP-seq-ARID1AKO-ARID1BKD-Rep1
GSM2719747
HCT116 ARID1A-/- H3K4me3-ChIP-seq-ARID1AKO-ARID1BKD-Rep2
GSM2719748
HCT116 H3K27ac-ChIP-seq-WT-Rep1
GSM2719749
HCT116 H3K27ac-ChIP-seq-WT-Rep2
GSM2719750
HCT116 H3K27ac-ChIP-seq-ARID1BKD-Rep1
GSM2719751
HCT116 H3K27ac-ChIP-seq-ARID1BKD-Rep2
GSM2719752
HCT116 ARID1A-/- H3K27ac-ChIP-seq-ARID1AKO-Rep1
GSM2719753
HCT116 ARID1A-/- H3K27ac-ChIP-seq-ARID1AKO-Rep2
GSM2719754
HCT116 ARID1A-/- H3K27ac-ChIP-seq-ARID1AKO-ARID1BKD-Rep1
GSM2719755
HCT116 ARID1A-/- H3K27ac-ChIP-seq-ARID1AKO-ARID1BKD-Rep2
GSM2719756
HCT116 H3K27me3-ChIP-seq-WT-Rep1
GSM2719757
HCT116 H3K27me3-ChIP-seq-WT-Rep2
GSM2719758
HCT116 H3K27me3-ChIP-seq-ARID1BKD-Rep1
GSM2719759
HCT116 H3K27me3-ChIP-seq-ARID1BKD-Rep2
GSM2719760
HCT116 ARID1A-/- H3K27me3-ChIP-seq-ARID1AKO-Rep1
GSM2719761
HCT116 ARID1A-/- H3K27me3-ChIP-seq-ARID1AKO-Rep2
GSM2719762
HCT116 ARID1A-/- H3K27me3-ChIP-seq-ARID1AKO-ARID1BKD-Rep1
GSM2719763
HCT116 ARID1A-/- H3K27me3-ChIP-seq-ARID1AKO-ARID1BKD-Rep2
GSM2719764
HCT116 Input-ChIP-seq-WT-Rep1
GSM2719765
HCT116 Input-ChIP-seq-ARID1BKD-Rep1
GSM2719766
HCT116 ARID1A-/- Input-ChIP-seq-ARID1AKO-Rep1
GSM2719767
HCT116 ARID1A-/- Input-ChIP-seq-ARID1AKO-ARID1BKD-Rep1
GSM2719768
HCT116 RNA-seq-WT-Rep1
GSM2719769
HCT116 RNA-seq-WT-Rep2
GSM2719770
HCT116 RNA-seq-ARID1BKD-Rep1
GSM2719771
HCT116 RNA-seq-ARID1BKD-Rep2
GSM2719772
HCT116 ARID1A-/- RNA-seq-ARID1AKO-Rep1
GSM2719773
HCT116 ARID1A-/- RNA-seq-ARID1AKO-Rep2
GSM2719774
HCT116 ARID1A-/- RNA-seq-ARID1AKO-ARID1BKD-Rep1
GSM2719775
HCT116 ARID1A-/- RNA-seq-ARID1AKO-ARID1BKD-Rep2
GSM2719872
TOV21G ATAC-seq-WT-Rep1
GSM2719873
TOV21G ATAC-seq-WT-Rep2
GSM2719874
TOV21G ATAC-seq-ARID1BKD-Rep1
GSM2719875
TOV21G ATAC-seq-ARID1BKD-Rep2
GSM2719876
TOV21G H3K4me-ChIP-seq-WT-Rep1
GSM2719877
TOV21G H3K4me-ChIP-seq-WT-Rep2
GSM2719878
TOV21G H3K4me-ChIP-seq-ARID1BKD-Rep1
GSM2719879
TOV21G H3K4me-ChIP-seq-ARID1BKD-Rep2
GSM2719880
TOV21G H3K4me3-ChIP-seq-WT-Rep1
GSM2719881
TOV21G H3K4me3-ChIP-seq-WT-Rep2
GSM2719882
TOV21G H3K4me3-ChIP-seq-ARID1BKD-Rep1
GSM2719883
TOV21G H3K4me3-ChIP-seq-ARID1BKD-Rep2
GSM2719884
TOV21G H3K27ac-ChIP-seq-WT-Rep1
GSM2719885
TOV21G H3K27ac-ChIP-seq-WT-Rep2
GSM2719886
TOV21G H3K27ac-ChIP-seq-ARID1BKD-Rep1
GSM2719887
TOV21G H3K27ac-ChIP-seq-ARID1BKD-Rep2
GSM2719888
TOV21G Input-ChIP-seq-WT-Rep1
GSM2719889
TOV21G Input-ChIP-seq-ARID1BKD-Rep1
GSM2719890
TOV21G RNA-seq-WT-Rep1
GSM2719891
TOV21G RNA-seq-WT-Rep2
GSM2719892
TOV21G RNA-seq-ARID1BKD-Rep1
GSM2719893
TOV21G RNA-seq-ARID1BKD-Rep2
This SuperSeries is composed of the following SubSeries:
GSE101966
ARID1A and ARID1B loss in HCT116 cells
GSE101974
ARID1A and ARID1B loss in TOV21G cells
Relations
BioProject
PRJNA396048
Download family
Format
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TXT
Supplementary file
Size
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File type/resource
GSE101975_RAW.tar
36.0 Mb
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