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Series GSE101909 Query DataSets for GSE101909
Status Public on May 23, 2018
Title Fgf8 signaling alters the osteogenic cell fate in anterior hard palate
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary FGF signaling has been implicated in the regulation of osteogenesis in both intramembranous and endochondral ossification. In the developing palate, the anterior bony palate forms by direct differentiation of cranial neural crest-derived mesenchymal cells, but the signals that regulate osteogenic cell fate remains unclear. In the present study, we present evidence that locally activated FGF8 signaling in the anterior palate leads to complete bone loss of the palatine process of the maxilla (ma) and ectopic cartilage formation. This aberrant developmental process was accompanied by significantly elevated level of cell proliferation, which contributes to abnormally thickened ma, and complete inhibition of Osterix expression, which accounts for the lack of bone formation. Consistent with the phenotype, RNA-Sequencing (RNA-Seq) analysis further demonstrated that augmented FGF8 signaling downregulated genes involved in ossification, biomineral tissue development, and bone mineralization, but upregulated genes involved in cell proliferation, cartilage development, and cell fate commitment. Expression validation of selected genes supported the RNA-Seq results. We conclude that FGF signaling functions as a negative regulator of osteogenic fate but promotes chondrogenesis of cranial neural crest cell-derived mesenchyme in the hard palate, which will have implication in directed differentiation of precursor cells for clinical application.
 
Overall design Examination of mRNA level in E14.5 and E16.5 anterior hard palatal tissues from control and Shox2-Cre; R26R-Fgf8 mutant.
 
Contributor(s) Huang Z, Xu J, Chen Y
Citation(s) 29342370
Submission date Jul 26, 2017
Last update date Jul 25, 2021
Contact name Yiping Chen
E-mail(s) ychen@tulane.edu
Organization name Tulane University
Department CMB
Street address 6400 Freret
City New Orleans
State/province LA
ZIP/Postal code 70118
Country USA
 
Platforms (1)
GPL21103 Illumina HiSeq 4000 (Mus musculus)
Samples (12)
GSM2718469 E14.5_Ctrl1
GSM2718470 E14.5_Ctrl2
GSM2718471 E14.5_Fgf8_1
Relations
BioProject PRJNA396056
SRA SRP113724

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE101909_E14.5_MT_vs_E14.5_Ctrl_DESeq2_result_files.txt.gz 695.1 Kb (ftp)(http) TXT
GSE101909_E14.5_Normalized_counts.txt.gz 698.2 Kb (ftp)(http) TXT
GSE101909_E14.5_raw_counts.txt.gz 337.6 Kb (ftp)(http) TXT
GSE101909_E16.5_MT_vs_E16.5_Ctrl_DESeq2_result_files.txt.gz 716.1 Kb (ftp)(http) TXT
GSE101909_E16.5_Normalized_counts.txt.gz 718.1 Kb (ftp)(http) TXT
GSE101909_E16.5_raw_counts.txt.gz 343.3 Kb (ftp)(http) TXT
GSE101909_RAW.tar 1.6 Mb (http)(custom) TAR (of TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record

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