|
| Status |
Public on Apr 06, 2018 |
| Title |
Intron retention induced by microsatellite expansions as a disease biomarker. |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by high throughput sequencing
Other
|
| Summary |
Microsatellite expansions often occur in non-coding regions of the genome. In this study, we test their effect on host transcript RNA processing.
|
| |
|
| Overall design |
RNA-seq on affected tissues and peripheral blood from control and affected patients.
|
| Web link |
https://www.ncbi.nlm.nih.gov/pubmed/29610297
|
| |
|
| Contributor(s) |
Thomas JD, Sznajder ŁJ |
| Citation(s) |
29610297 |
| |
| Submission date |
Jul 24, 2017 |
| Last update date |
Mar 26, 2019 |
| Contact name |
James Douglas Thomas |
| E-mail(s) |
jdthomas@fredhutch.org
|
| Phone |
5047840368
|
| Organization name |
Fred Hutchinson Cancer Research Center
|
| Department |
Computational Biology
|
| Lab |
Robert K. Bradley
|
| Street address |
1100 Fairview Ave. N., B3-111
|
| City |
Seattle |
| State/province |
WA |
| ZIP/Postal code |
98109 |
| Country |
USA |
| |
|
| Platforms (2) |
| GPL10999 |
Illumina Genome Analyzer IIx (Homo sapiens) |
| GPL18573 |
Illumina NextSeq 500 (Homo sapiens) |
|
| Samples (18)
|
|
| Relations |
| BioProject |
PRJNA395589 |
| SRA |
SRP113495 |
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