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Series GSE101603 Query DataSets for GSE101603
Status Public on Oct 31, 2017
Title Landscape and evolution of tissue-specific alternative polyadenylation across Drosophila species
Organisms Drosophila melanogaster; Drosophila virilis; Drosophila yakuba
Experiment type Expression profiling by high throughput sequencing
Summary we generated developmental and tissue-specific 3'-seq libraries from D. yakuba and D. virilis to study the role of alternative polyadenylation across Drosophila species
 
Overall design Deep 3'-sequencing data from 23 developmental stages, tissues and cell lines of D. melanogaster, D.yakuba, and D. virilis
Please note that 23 refer to # samples in Drosophila melanogaster. D. yakuba and D. virillis samples were used to study species homology in the paper, which are from the same tissue type as D. melanogaster.
 
Contributor(s) Sanfilippo P, Wen J, Lai EC
Citation(s) 29191225
Submission date Jul 19, 2017
Last update date Jul 25, 2021
Contact name Jiayu Wen
Organization name John Curtin School of Medical Research, The Australian National University
Department Department of Genome Science
Lab The Wen Lab
Street address 133 Garran Rd
City CANBERRA
State/province ACT
ZIP/Postal code 2601
Country Australia
 
Platforms (3)
GPL15334 Illumina HiSeq 1000 (Drosophila melanogaster)
GPL23800 Illumina HiSeq 1000 (Drosophila virilis)
GPL23801 Illumina HiSeq 1000 (Drosophila yakuba)
Samples (44)
GSM2710785 3'-seq in gm2 cell line [9_gm2]
GSM2710786 3'-seq in mbn2 cell line [43_mbn2]
GSM2710787 3'-seq in cmel1 cell line [87_cmel1]
Relations
BioProject PRJNA394978
SRA SRP112849

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE101603_RAW.tar 331.6 Mb (http)(custom) TAR (of BW)
GSE101603_dm6flybase_3seq_genePlus3ext_counts.tab.gz 382.4 Kb (ftp)(http) TAB
GSE101603_dm6flybase_RNAseq_genePlus3ext_counts.tab.gz 108.5 Kb (ftp)(http) TAB
GSE101603_dvir3_3seq_genePlus3ext_counts.tab.gz 141.9 Kb (ftp)(http) TAB
GSE101603_dvir3_RNAseq_genePlus3ext_counts.tab.gz 94.9 Kb (ftp)(http) TAB
GSE101603_dyak3_3seq_genePlus3ext_counts.tab.gz 124.0 Kb (ftp)(http) TAB
GSE101603_dyak3_RNAseq_genePlus3ext_counts.tab.gz 107.3 Kb (ftp)(http) TAB
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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