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Series GSE101423 Query DataSets for GSE101423
Status Public on Mar 26, 2018
Title Clock-dependent chromatin topology modulates circadian transcription and behavior
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Other
Summary The circadian clock dynamically rewires promoter-enhancer loops in tissues to drive robust daily rhythms in gene transcription and locomoter activity.
 
Overall design Total RNA and crosslinked genomic DNA extracted from mouse tissues during the dirunal cycle. Mouse genotype conditions include WT, Bmal1 KO, and Cry1Intron KO.
 
Contributor(s) Mermet J, Yeung J, Hurni C, Mauvoisin D, Gustafson K, Jouffe C, Nicolas D, Emmenegger Y, Gobet C, Franken P, Gachon F, Naef F
Citation(s) 29572261
Submission date Jul 13, 2017
Last update date May 15, 2019
Contact name Felix Naef
E-mail(s) felix.naef@epfl.ch
Phone +41 (0)21 693 16 21
Organization name École Polytechnique Fédérale de Lausanne
Department Bioengineering
Lab Computational Systems Biology
Street address AAB 040 Station 15
City Lausanne
ZIP/Postal code 1015
Country Switzerland
 
Platforms (2)
GPL17021 Illumina HiSeq 2500 (Mus musculus)
GPL19057 Illumina NextSeq 500 (Mus musculus)
Samples (221)
GSM2702480 ZT24-WT-Kidney
GSM2702481 ZT22-WT-Kidney
GSM2702482 ZT16-Cry1IntronKO-Kidney
Relations
BioProject PRJNA394154
SRA SRP111878

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE101423_RNASeq_Kidney_WT_RPKM.txt.gz 2.7 Mb (ftp)(http) TXT
GSE101423_RNASeq_LiverKidney_WTCry1IntronKO_RPKM.txt.gz 9.4 Mb (ftp)(http) TXT
GSE101423_processed_4Cseq_log10_counts_ZT20_ZT08.txt.gz 2.4 Mb (ftp)(http) TXT
GSE101423_processed_4Cseq_log10_counts_around_the_clock.txt.gz 5.6 Mb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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