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| Status |
Public on Sep 04, 2017 |
| Title |
Expression of long non-coding RNAs during spermatogenesis |
| Organism |
Mus musculus |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
Total RNA from purified stages of spermatogenesis were subjected to next generation RNA-seq (100bp, paired-end, strand-specific). The expression of mRNAs and lncRNAs was calculated as FPKM values.
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| Overall design |
Three biological replicates of spermatogonia, pachytene and round spermatids were utilized for RNA isolation.
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| Contributor(s) |
Khalil A, Somasundaram S |
| Citation(s) |
29044429 |
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| Submission date |
Jul 08, 2017 |
| Last update date |
May 15, 2019 |
| Contact name |
Ahmad M Khalil |
| E-mail(s) |
amk175@case.edu
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| Organization name |
Case Western Reserve University
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| Department |
Genetics and Genome Sciences
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| Lab |
BRB719
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| Street address |
2109 Adelbert Rd
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| City |
Cleveland |
| State/province |
OH |
| ZIP/Postal code |
44106 |
| Country |
USA |
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| Platforms (1) |
| GPL17021 |
Illumina HiSeq 2500 (Mus musculus) |
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| Samples (9)
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| Relations |
| BioProject |
PRJNA393538 |
| SRA |
SRP111389 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE100964_File_1_DE_expressed_mRNAs_Gonia_vs_Pach_vs_RS.xlsx |
5.9 Mb |
(ftp)(http) |
XLSX |
| GSE100964_File_2_DE_expressed_lncRNAs_Gonia_vs_Pach_vs_RS.xlsx |
881.6 Kb |
(ftp)(http) |
XLSX |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
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