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Series GSE100597 Query DataSets for GSE100597
Status Public on Jun 28, 2017
Title Single-cell landscape of transcriptional heterogeneity and cell fate decisions during mouse early gastrulation
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary This study explores lineage and regulatory processes involved in early post implantation mouse embryos using single-cell RNA-seq
 
Overall design Single cells from C57Bl/6Babr mouse embryos at E3.5, E4.5, E5.5 and E6.5 were isolated and subjected to single-cell RNA-seq protocol.
 
Contributor(s) Mohammed H, Hernando-Herraez I, Reik W
Citation(s) 28768204
Submission date Jun 28, 2017
Last update date May 15, 2019
Contact name Felix Krueger
E-mail(s) fkrueger@altoslabs.com
Organization name Altos Labs
Department Bioinformatics
Street address Granta Park
City Cambridge
ZIP/Postal code CB21 6GP
Country United Kingdom
 
Platforms (1)
GPL17021 Illumina HiSeq 2500 (Mus musculus)
Samples (721)
GSM2687696 E3.5_P11.P6.P10_cell181_embryo_single
GSM2687697 E3.5_P11.P6.P10_cell182_embryo_single
GSM2687698 E3.5_P11.P6.P10_cell183_embryo_single
Relations
BioProject PRJNA392258
SRA SRP110669

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE100597_count_table_QC_filtered.txt.gz 7.7 Mb (ftp)(http) TXT
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Raw data are available in SRA
Processed data are available on Series record
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