|
| Status |
Public on May 23, 2018 |
| Title |
Transcriptomic analysis of A. baumannii during the course of a pneumonia infection |
| Organism |
Acinetobacter baumannii |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
Differentially expressed genes were detected during the mice infection in lungs
|
| |
|
| Overall design |
Illumina RNA-seq analysis of bacteria grown during the lung infection versus bacteria grown in LB-flasks
|
| |
|
| Contributor(s) |
Poza M, Lavin JL |
| Citation(s) |
29334313, 31555607 |
| |
| Submission date |
Jun 27, 2017 |
| Last update date |
Oct 01, 2019 |
| Contact name |
Jose Luis Lavin |
| E-mail(s) |
joluito@gmail.com
|
| Organization name |
CIC bioGUNE
|
| Street address |
Parque Tecnológico de Bizkaia Building 502, Floor 0
|
| City |
Derio |
| State/province |
Bizkaia |
| ZIP/Postal code |
48160 |
| Country |
Spain |
| |
|
| Platforms (1) |
| GPL23630 |
Illumina HiScanSQ (Acinetobacter baumannii) |
|
| Samples (12)
|
| GSM2686340 |
Acinetobacter baumannii ATCC 17978 grown in LB medium 1 |
| GSM2686341 |
Acinetobacter baumannii ATCC 17978 grown in LB medium 2 |
| GSM2686342 |
Acinetobacter baumannii ATCC 17978 grown in LB medium 3 |
| GSM2686343 |
Acinetobacter baumannii ATCC 17978 grown in mice lung 1 |
| GSM2686344 |
Acinetobacter baumannii ATCC 17978 grown in mice lung 2 |
| GSM2686345 |
Acinetobacter baumannii ATCC 17978 grown in mice lung 3 |
| GSM2686346 |
Acinetobacter baumannii AbH12O-A2 grown in LB medium 1 |
| GSM2686347 |
Acinetobacter baumannii AbH12O-A2 grown in LB medium 2 |
| GSM2686348 |
Acinetobacter baumannii AbH12O-A2 grown in LB medium 3 |
| GSM2686349 |
Acinetobacter baumannii AbH12O-A2 grown in mice lung 1 |
| GSM2686350 |
Acinetobacter baumannii AbH12O-A2 grown in mice lung 2 |
| GSM2686351 |
Acinetobacter baumannii AbH12O-A2 grown in mice lung 3 |
|
| Relations |
| BioProject |
PRJNA392253 |
| SRA |
SRP110668 |
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