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Series GSE100425 Query DataSets for GSE100425
Status Public on Jul 19, 2017
Title Heterogeneous responses of hematopoietic stem cells to inflammatory stimuli are altered with age - bulk
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary This includes bulk RNA-seq samples for sorted LT-HSCs, ST-HSCs, and MPPs stimulated (or not) with LPS+PAM. Samples taken at various time points.
 
Overall design sorted LT-HSCs, ST-HSCs, and MPPs stimulated (or not) with LPS+PAM at various time points
 
Contributor(s) de Boer CG, Kowalczyk M, Mehta A, Mann M
Citation(s) 30540934
Mati Mann, Arnav Mehta, Carl de Boer, Monika S. Kowalczyk, Kevin Lee, Daneyal Farouq, Aviv Regev, and David Baltimore. Heterogeneous Responses of Hematopoietic Stem Cells to Inflammatory Stimuli are Altered with Age. bioRxiv 2017. doi:10.1101/163402
Submission date Jun 23, 2017
Last update date May 15, 2019
Contact name Carl G de Boer
Organization name The Broad Institute
Lab Aviv Regev
Street address 415 Main St
City Cambridge
State/province MA
ZIP/Postal code 02139
Country USA
 
Platforms (1)
GPL17021 Illumina HiSeq 2500 (Mus musculus)
Samples (127)
GSM2680632 RNA-seq from old mouse 2 LTs; treatment: None at 0h; technical replicate 3.
GSM2680633 RNA-seq from old mouse 2 LTs; treatment: None at 0h; technical replicate 4.
GSM2680634 RNA-seq from old mouse 2 LTs; treatment: LPS+PAM at 12h; technical replicate 2.
This SubSeries is part of SuperSeries:
GSE100428 Heterogeneous responses of hematopoietic stem cells to inflammatory stimuli are altered with age
Relations
BioProject PRJNA391709
SRA SRP110288

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE100425_Bulk_TPM.txt.gz 1.9 Mb (ftp)(http) TXT
GSE100425_Bulk_counts.txt.gz 2.6 Mb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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