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Series GSE100378 Query DataSets for GSE100378
Status Public on Jul 21, 2017
Title Shared αβ T Cell Receptor Usage in Lungs of Sarcoidosis Patients with Löfgren’s Syndrome [iRepertoire]
Organism Homo sapiens
Experiment type Other
Summary Expansions of CD4+ T cells utilizing TRAV12-1 and TRBV2 were found exclusively in HLA-DR3+ LS patients. These TCRs shared CDR3 homology, suggesting that these T cells are responsible for recognizing sarcoidosis-associated antigen(s) and are involved in the local alveolitis.
 
Overall design Analysis of TCR sequences from 13 sarcoidosis and 3 control patient blood and/or lung samples.
 
Contributor(s) Mitchell AM, Kaiser Y, Falta MT, Munson DJ, Eklund A, Slansky JE, Grunewald J, Fontenot AP
Citation(s) 28827283
Submission date Jun 22, 2017
Last update date Jul 25, 2021
Contact name Andrew P Fontenot
E-mail(s) andrew.fontenot@ucdenver.edu
Organization name University of Colorado Denver
Department Dept. of Medicine
Lab Andrew Fontenot
Street address 12700 E 19th Ave, P15, Rm 10410
City Aurora
State/province Colorado
ZIP/Postal code 80045
Country USA
 
Platforms (1)
GPL15520 Illumina MiSeq (Homo sapiens)
Samples (23)
GSM2679761 Pt. 989BAL [iRepertoire]
GSM2679762 Pt. 989 Blood [iRepertoire]
GSM2679763 Pt. 1000BAL [iRepertoire]
This SubSeries is part of SuperSeries:
GSE100558 Shared αβ T Cell Receptor Usage in Lungs of Sarcoidosis Patients with Löfgren’s Syndrome
Relations
BioProject PRJNA391483
SRA SRP110174

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE100378_RAW.tar 11.8 Mb (http)(custom) TAR (of TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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