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Series GSE100029 Query DataSets for GSE100029
Status Public on Dec 18, 2019
Title Macrophages directly contribute collagen to scar formation during zebrafish heart regeneration and mouse heart repair
Organism Danio rerio
Experiment type Expression profiling by high throughput sequencing
Summary Canonical roles for macrophages in mediating the fibrotic response after a heart attack (myocardial infarction) include turnover of the extracellular matrix and activation of cardiac fibroblasts to initiate collagen deposition. Here we reveal through studying the functional kinetics of fibrosis during zebrafish heart regeneration and mouse heart repair that macrophages can directly contribute collagen to the forming scar. Unbiased transcriptomics revealed an up-regulation of collagen isoforms in both zebrafish and mouse macrophages following injury. Adoptive transfer of macrophages from collagen-tagged transgenic zebrafish and splenic monocyte-derived macrophages from adult mouse GFPtpz-collagen donors, enhanced scar formation and induced fibrosis, respectively, via cell autonomous production of collagen. In zebrafish, macrophage-specific targeting of collagen 4a binding protein and cognate collagen 4a1 followed by transfer led to significantly reduced scarring in cryo-injured hosts. These findings contrast with the current model of scarring whereby collagen deposition is exclusively attributed to myofibroblasts, and implicate macrophages as direct contributors to fibrosis during heart repair.
 
Overall design Whole nuclear transcriptome profiling of macrohages in response to 2 types of heart injury (ventricular resection and cryo-injury) at 3 different stages of regenerative process in the zebrafish heart.
 
Contributor(s) Simões FC, Kenyon A, Gavriouchkina D, Weinberger M, Masmanian E, Meyes S, Sauka-Spengler T, Riley PR
Citation(s) 32001677
Submission date Jun 14, 2017
Last update date Jul 25, 2021
Contact name Tatjana Sauka-Spengler
E-mail(s) tatjana.sauka-spengler@imm.ox.ac.uk
Organization name MRC Weatherall Institute of Molecular Medicine
Department University of Oxford
Lab Sauka-Spengler lab
Street address Radcliffe Department of Medicine
City Oxford
State/province Oxfordshire
ZIP/Postal code OX3 9DS
Country United Kingdom
 
Platforms (1)
GPL20828 Illumina NextSeq 500 (Danio rerio)
Samples (21)
GSM2668096 Mpeg 1 days post injury sham1  
GSM2668097 Mpeg 1 days post injury sham2
GSM2668098 Mpeg 1 days post injury sham3
Relations
BioProject PRJNA390533
SRA SRP109201

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE100029_RAW.tar 2.3 Gb (http)(custom) TAR (of BW)
GSE100029_count.table.txt.gz 789.5 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record

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