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Platform GPL9970 Query DataSets for GPL9970
Status Public on Jan 26, 2010
Title NimbleGen Danio rerio 385K Zv7 tiling array
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Danio rerio
Manufacturer Nimblegen
Manufacture protocol see manufacturer's web site www.nimblegen.com
 
Description UCSC zebrafish genome sequence Zv7
385K 50mer probes were printed and were spaced by 30 bp resulting in 80 bp resolution. Tiled regions include specifically selected genes (i.e. maternally provided genes, genes that are transcribed at zygotic genome activation, important developmental genes and known late genes) as well as two large contiguous genomic regions on linkage groups 3 and 11.
The .ndf and .pos files are linked below as supplementary files.
 
Submission date Jan 25, 2010
Last update date Jan 26, 2010
Contact name Yong Zhang
Organization name Tongji University
Street address 1239 Siping Road
City Shanghai
ZIP/Postal code 200092
Country China
 
Samples (12) GSM500898, GSM500899, GSM500900, GSM500901, GSM500902, GSM500903 
Series (1)
GSE20023 Chromatin signature of embryonic pluripotency is established during zygotic genome activation [Danio rerio]

Data table header descriptions
ID
SEQUENCE Sequence of oligo
Chromosome Chromosomal location
RANGE_GB Chromosome Accession number
SPOT_ID
RANGE_START Chromosomal start position of oligo
LENGTH Oligo length
RANGE_END Chromosomal end position of oligo

Data table
ID SEQUENCE Chromosome RANGE_GB SPOT_ID RANGE_START LENGTH RANGE_END
ZV7_NA6FS000000205 AAGTTGGCGGTTCGTTCCGTTGTGGCTAAGGAAATGAACGAATGATTGTT ZV7_NA6 ZV7_NA6 205 50 254
ZV7_NA6FS000000284 GTTATGCAAAGTTTAACTTAATGTTTTAAGTCAGTTGAGATGACTAAGTT ZV7_NA6 ZV7_NA6 284 50 333
ZV7_NA6FS000000366 TATCAGTGTAGTAAAAGGTCAATAAACTGATCTCAGATTTTGCCGAACCC ZV7_NA6 ZV7_NA6 366 50 415
ZV7_NA6FS000000441 TAGCAGTTAAAAAGGTTCAGCCCATTGAAAGGAAACGAACAATCTGTAAA ZV7_NA6 ZV7_NA6 441 50 490
ZV7_NA6FS000000525 CCTGAATATGTGTGTATTGAGGATGTGGATAAAATAATCAGCAGCGCGCA ZV7_NA6 ZV7_NA6 525 50 574
ZV7_NA6FS000000605 CTTCTGAAAGCACATTTACTCCTATCGAGAGCTCAAGATTTCCGGCATGA ZV7_NA6 ZV7_NA6 605 50 654
ZV7_NA6FS000000681 ACAGGCGGGGTTGAATCATGAGCCCCGGCAGCAGCAGCGGAGATTCGACG ZV7_NA6 ZV7_NA6 681 50 730
ZV7_NA6FS000000765 GTCACGGCAGAGAGAAGTTTCGAAATCTACAAAAACTTCCTCTTCGGGTC ZV7_NA6 ZV7_NA6 765 50 814
ZV7_NA6FS000000845 TGTTGGTAAACAGACCTCATGTCACTGTGCTGTCTCTGCCAAATGACACT ZV7_NA6 ZV7_NA6 845 50 894
ZV7_NA6FS000000923 AGTTCTGTTTACCACAATAACAAAACACTGCAACCGCATTAAGTCAGTCA ZV7_NA6 ZV7_NA6 923 50 972
ZV7_NA6FS000001001 TGATATAAAAGGCACGTTAAAATGATAAAAAGACTAATCTTATTTGACAG ZV7_NA6 ZV7_NA6 1001 50 1050
ZV7_NA6FS000001083 GGGCACTTCAAAATAACAATAAAAACAGTGCAGTCTTACTAGAAAGTAAT ZV7_NA6 ZV7_NA6 1083 50 1132
ZV7_NA6FS000001161 AATGTCATGGGCACTTCAAATTTTTTTTAGATTGTCTTTATAAATATTGA ZV7_NA6 ZV7_NA6 1161 50 1210
ZV7_NA6FS000001241 CAGCAAATGCGTAAAGATCTAAAAGGCGATTTATTTGCCAACATGAACCT ZV7_NA6 ZV7_NA6 1241 50 1290
ZV7_NA6FS000001321 AATTCTGCGACTTAATGCCTTTAGAGAGACACATCAATGACACACACACA ZV7_NA6 ZV7_NA6 1321 50 1370
ZV7_NA6FS000001415 CACACACACAGACAAGCACACTTTAGGCTATGGTAAAACATTGGATTTTA ZV7_NA6 ZV7_NA6 1415 50 1464
ZV7_NA6FS000001491 ACCAAAACTTGTAGGCCTAATCATTCCTGAGCTTGTAATCATGCAACAAG ZV7_NA6 ZV7_NA6 1491 50 1540
ZV7_NA6FS000001695 GTAGTTTGAAATACTATAGAGAATTTAATCTGTAAAATAACAAAAACTGT ZV7_NA6 ZV7_NA6 1695 50 1744
ZV7_NA6FS000001775 ATATATCACTGTAAACTATTAAAAGGGTCCATAAAAGTCCCCTTTTCGAA ZV7_NA6 ZV7_NA6 1775 50 1824
ZV7_NA6FS000001901 AAACATGAATCAAAAAATACTGAAAACTGCTCATTTATATTTAGAGAAAA ZV7_NA6 ZV7_NA6 1901 50 1950

Total number of rows: 350607

Table truncated, full table size 36751 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary file Size Download File type/resource
GPL9970_081007_Harvard_Zv7_ChIP.ndf.gz 23.5 Mb (ftp)(http) NDF
GPL9970_081007_Harvard_Zv7_ChIP.pos.gz 2.9 Mb (ftp)(http) POS

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