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Status
Public on Mar 11, 2002
Title
[Hu35KsubA] Affymetrix Human 35K SubA Array
Technology type
in situ oligonucleotide
Distribution
commercial
Organism
Homo sapiens
Manufacturer
Affymetrix
Manufacture protocol
see manufacturer's web site
Description
Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html Has 35714 entries and was indexed 29-Jan-2002. Keywords = high density oligonucleotide array
Web link
http://www.affymetrix.com/support/technical/byproduct.affx?product=hu35k http://www.affymetrix.com/analysis/index.affx
Submission date
Feb 19, 2002
Last update date
Jun 03, 2009
Organization
Affymetrix, Inc.
E-mail(s)
geo@ncbi.nlm.nih.gov, support@affymetrix.com
Phone
888-362-2447
URL
http://www.affymetrix.com/index.affx
Street address
City
Santa Clara
State/province
CA
ZIP/Postal code
95051
Country
USA
Samples (318)
GSM2285 , GSM2290 , GSM2295 , GSM2300 , GSM2305 , GSM2310
GSM2314 ,
GSM2319 ,
GSM2324 ,
GSM2329 ,
GSM1674908 ,
GSM1674909 ,
GSM1674910 ,
GSM1674911 ,
GSM1674912 ,
GSM1674913 ,
GSM1674914 ,
GSM1674915 ,
GSM1674916 ,
GSM1674917 ,
GSM1674918 ,
GSM1674919 ,
GSM1674920 ,
GSM1674921 ,
GSM1674922 ,
GSM1674923 ,
GSM1674924 ,
GSM1674925 ,
GSM1674926 ,
GSM1674927 ,
GSM1674928 ,
GSM1674929 ,
GSM1674930 ,
GSM1674931 ,
GSM1674932 ,
GSM1674933 ,
GSM1674934 ,
GSM1674935 ,
GSM1674936 ,
GSM1674937 ,
GSM1686773 ,
GSM1686774 ,
GSM1686775 ,
GSM1686789 ,
GSM1686790 ,
GSM1686791 ,
GSM1686792 ,
GSM1686793 ,
GSM1686794 ,
GSM1686795 ,
GSM1686796 ,
GSM1686797 ,
GSM1686798 ,
GSM1686799 ,
GSM1686825 ,
GSM1686826 ,
GSM1686827 ,
GSM1686828 ,
GSM1686829 ,
GSM1686830 ,
GSM1686831 ,
GSM1686832 ,
GSM1686833 ,
GSM1686834 ,
GSM1686835 ,
GSM1686836 ,
GSM1686837 ,
GSM1686838 ,
GSM1686839 ,
GSM1686840 ,
GSM1686841 ,
GSM1686842 ,
GSM1686843 ,
GSM1686844 ,
GSM1686845 ,
GSM1686846 ,
GSM1686847 ,
GSM1686848 ,
GSM1686895 ,
GSM1686896 ,
GSM1686897 ,
GSM1686898 ,
GSM1686899 ,
GSM1686900 ,
GSM1686901 ,
GSM1686902 ,
GSM1686903 ,
GSM1686904 ,
GSM1686905 ,
GSM1686906 ,
GSM1686907 ,
GSM1686908 ,
GSM1686909 ,
GSM1686910 ,
GSM1686911 ,
GSM1686912 ,
GSM1686913 ,
GSM1686914 ,
GSM1686915 ,
GSM1686916 ,
GSM1686917 ,
GSM1686918 ,
GSM1686919 ,
GSM1686920 ,
GSM1686921 ,
GSM1686922 ,
GSM1686923 ,
GSM1686924 ,
GSM1686925 ,
GSM1686926 ,
GSM1686927 ,
GSM1686928 ,
GSM1686929 ,
GSM1686930 ,
GSM1686931 ,
GSM1686932 ,
GSM1686933 ,
GSM1686934 ,
GSM1686935 ,
GSM1686936 ,
GSM1686952 ,
GSM1686953 ,
GSM1686954 ,
GSM1686955 ,
GSM1686956 ,
GSM1686957 ,
GSM1686958 ,
GSM1686959 ,
GSM1686960 ,
GSM1686961 ,
GSM1686962 ,
GSM1686963 ,
GSM1686964 ,
GSM1686965 ,
GSM1686966 ,
GSM1686967 ,
GSM1686968 ,
GSM1686969 ,
GSM1686970 ,
GSM1686971 ,
GSM1686972 ,
GSM1686973 ,
GSM1686974 ,
GSM1686975 ,
GSM1686976 ,
GSM1686977 ,
GSM1686978 ,
GSM1686979 ,
GSM1686980 ,
GSM1686981 ,
GSM1686982 ,
GSM1686983 ,
GSM1686984 ,
GSM1686985 ,
GSM1686986 ,
GSM1686989 ,
GSM1686990 ,
GSM1686991 ,
GSM1686992 ,
GSM1686993 ,
GSM1686994 ,
GSM1686995 ,
GSM1686996 ,
GSM1686997 ,
GSM1686998 ,
GSM1686999 ,
GSM1687000 ,
GSM1687001 ,
GSM1687002 ,
GSM1687072 ,
GSM1687073 ,
GSM1687074 ,
GSM1687075 ,
GSM1687076 ,
GSM1687077 ,
GSM1687078 ,
GSM1687079 ,
GSM1687080 ,
GSM1687081 ,
GSM1687082 ,
GSM1687083 ,
GSM1687084 ,
GSM1687085 ,
GSM1687086 ,
GSM1687087 ,
GSM1687088 ,
GSM1687089 ,
GSM1687090 ,
GSM1687091 ,
GSM1687092 ,
GSM1687093 ,
GSM1687094 ,
GSM1687095 ,
GSM1687096 ,
GSM1687097 ,
GSM1687098 ,
GSM1687099 ,
GSM1687100 ,
GSM1687101 ,
GSM1687102 ,
GSM1687103 ,
GSM1687104 ,
GSM1687105 ,
GSM1687106 ,
GSM1687107 ,
GSM1687108 ,
GSM1687109 ,
GSM1687110 ,
GSM1687111 ,
GSM1687112 ,
GSM1687113 ,
GSM1687114 ,
GSM1687115 ,
GSM1687116 ,
GSM1687117 ,
GSM1687118 ,
GSM1687119 ,
GSM1687120 ,
GSM1687121 ,
GSM1687122 ,
GSM1687123 ,
GSM1687124 ,
GSM1687125 ,
GSM1687126 ,
GSM1687127 ,
GSM1687128 ,
GSM1687129 ,
GSM1687130 ,
GSM1687131 ,
GSM1687132 ,
GSM1687133 ,
GSM1687134 ,
GSM1687135 ,
GSM1687136 ,
GSM1687137 ,
GSM1687138 ,
GSM1687139 ,
GSM1687140 ,
GSM1687141 ,
GSM1687142 ,
GSM1687143 ,
GSM1687144 ,
GSM1687145 ,
GSM1687146 ,
GSM1687147 ,
GSM1687148 ,
GSM1687149 ,
GSM1687150 ,
GSM1687151 ,
GSM1687152 ,
GSM1687153 ,
GSM1687154 ,
GSM1687155 ,
GSM1687156 ,
GSM1687157 ,
GSM1687158 ,
GSM1687159 ,
GSM1687160 ,
GSM1687161 ,
GSM1687162 ,
GSM1687163 ,
GSM1687164 ,
GSM1687165 ,
GSM1687166 ,
GSM1687167 ,
GSM1687168 ,
GSM1687169 ,
GSM1687170 ,
GSM1687171 ,
GSM1687172 ,
GSM1687173 ,
GSM1687174 ,
GSM1687175 ,
GSM1687176 ,
GSM1687177 ,
GSM1687178 ,
GSM1687179 ,
GSM1687180 ,
GSM1687181 ,
GSM1687182 ,
GSM1687183 ,
GSM1687184 ,
GSM1687185 ,
GSM1687186 ,
GSM1687187 ,
GSM1687188 ,
GSM1687189 ,
GSM1687190 ,
GSM1687191 ,
GSM1687192 ,
GSM1687193 ,
GSM1687194 ,
GSM1687195 ,
GSM1687196 ,
GSM1687197 ,
GSM1687198 ,
GSM1687199 ,
GSM1687200 ,
GSM1687201 ,
GSM1687202 ,
GSM1687203 ,
GSM1687204 ,
GSM1687205 ,
GSM1687206 ,
GSM1687207 ,
GSM1687208 ,
GSM1687209 ,
GSM1687210 ,
GSM1687211 ,
GSM1687212 ,
GSM1687213 ,
GSM1687214 ,
GSM1687215 ,
GSM1687216 ,
GSM1687217 ,
GSM1687218 ,
GSM1687219 ,
GSM1687220
Series (13)
GSE64
Insulin sensitive muscle sample pool 1
GSE65
Insulin sensitive muscle sample pool 2
GSE66
Insulin sensitive muscle sample pool 3
GSE67
Insulin sensitive muscle sample pool 4
GSE68
Insulin sensitive muscle sample pool 5
GSE69
Insulin resistant muscle sample pool 1
GSE70
Insulin resistant muscle sample pool 2
GSE71
Insulin resistant muscle sample pool 3
GSE72
Insulin resistant muscle sample pool 4
GSE73
Insulin resistant muscle sample pool 5
GSE121
Type 2 diabetes and insulin resistance
GSE68545
caArray_becic-00229: Gene expression analysis of prostate cancers
GSE68928
caArray_golub-00236: Multiclass cancer diagnosis using tumor gene expression signatures
Data table header descriptions
ID
Affymetrix Probe Set ID
GB_ACC
GenBank Accession Number
SPOT_ID
Species Scientific Name
The genus and species of the organism represented by the probe set.
Annotation Date
The date that the annotations for this probe array were last updated. It will generally be earlier than the date when the annotations were posted on the Affymetrix web site.
Sequence Type
Indicates whether the sequence is an Exemplar, Consensus or Control sequence. An Exemplar is a single nucleotide sequence taken directly from a public database. This sequence could be an mRNA or EST. A Consensus sequence, is a nucleotide sequence assembled by Affymetrix, based on one or more sequence taken from a public database.
Sequence Source
The database from which the sequence used to design this probe set was taken.
Target Description
GenBank description associated with the representative public identifier. Blank for some probe sets.
Representative Public ID
The accession number of a representative sequence. Note that for consensus-based probe sets, the representative sequence is only one of several sequences (sequence sub-clusters) used to build the consensus sequence and it is not directly used to derive the probe sequences. The representative sequence is chosen during array design as a sequence that is best associated with the transcribed region being interrogated by the probe set. Refer to the "Sequence Source" field to determine the database used.
Gene Title
Title of Gene represented by the probe set.
Gene Symbol
A gene symbol, when one is available (from UniGene).
ENTREZ_GENE_ID
Entrez Gene Database UID
RefSeq Transcript ID
References to multiple sequences in RefSeq. The field contains the ID and Description for each entry, and there can be multiple entries per ProbeSet.
Gene Ontology Biological Process
Gene Ontology Consortium Biological Process derived from LocusLink. Each annotation consists of three parts: "Accession Number // Description // Evidence". The description corresponds directly to the GO ID. The evidence can be "direct", or "extended".
Gene Ontology Cellular Component
Gene Ontology Consortium Cellular Component derived from LocusLink. Each annotation consists of three parts: "Accession Number // Description // Evidence". The description corresponds directly to the GO ID. The evidence can be "direct", or "extended".
Gene Ontology Molecular Function
Gene Ontology Consortium Molecular Function derived from LocusLink. Each annotation consists of three parts: "Accession Number // Description // Evidence". The description corresponds directly to the GO ID. The evidence can be "direct", or "extended".
Data table
ID
GB_ACC
SPOT_ID
Species Scientific Name
Annotation Date
Sequence Type
Sequence Source
Target Description
Representative Public ID
Gene Title
Gene Symbol
ENTREZ_GENE_ID
RefSeq Transcript ID
Gene Ontology Biological Process
Gene Ontology Cellular Component
Gene Ontology Molecular Function
AA000993_at
AA000993
Homo sapiens
Mar 11, 2009
Exemplar sequence
GenBank
ze46h10.r1 Soares retina N2b4HR Homo sapiens cDNA clone 362083 5'.
AA000993
PR domain containing 8
PRDM8
56978
NM_001099403 /// NM_020226
0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation
0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation
0003677 // DNA binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation
AA001296_s_at
AA001296
Homo sapiens
Mar 11, 2009
Exemplar sequence
GenBank
zh82b09.r1 Soares fetal liver spleen 1NFLS S1 Homo sapiens cDNA clone 427769 5'.
AA001296
PHD finger protein 23
PHF23
79142
NM_024297
0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation
AA002245_at
AA002245
Homo sapiens
Mar 11, 2009
Exemplar sequence
GenBank
zh85f01.r1 Soares fetal liver spleen 1NFLS S1 Homo sapiens cDNA clone 428089 5'.
AA002245
zinc finger CCCH-type containing 11A
ZC3H11A
9877
NM_014827
0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation
AA004231_at
AA004231
Homo sapiens
Mar 11, 2009
Exemplar sequence
GenBank
zh92a03.r1 Soares fetal liver spleen 1NFLS S1 Homo sapiens cDNA clone 428716 5'.
AA004231
AA004333_at
AA004333
Homo sapiens
Mar 11, 2009
Exemplar sequence
GenBank
zh91a01.r1 Soares fetal liver spleen 1NFLS S1 Homo sapiens cDNA clone 428616 5'.
AA004333
AA004987_at
AA004987
Homo sapiens
Mar 11, 2009
Exemplar sequence
GenBank
zh94b01.r1 Soares fetal liver spleen 1NFLS S1 Homo sapiens cDNA clone 428905 5'.
AA004987
BMP2 inducible kinase, mRNA (cDNA clone MGC:33000 IMAGE:5272264)
BMP2K
55589
NM_017593 /// NM_198892
0006468 // protein amino acid phosphorylation // inferred from electronic annotation
0005634 // nucleus // inferred from electronic annotation
0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation
AA005190_at
AA005190
Homo sapiens
Mar 11, 2009
Exemplar sequence
GenBank
zh95d06.r1 Soares fetal liver spleen 1NFLS S1 Homo sapiens cDNA clone 429035 5'.
AA005190
Ribonuclease 6 precursor
RNASET2
8635
NM_003730
0006401 // RNA catabolic process // traceable author statement
0005576 // extracellular region // traceable author statement /// 0005576 // extracellular region // inferred from electronic annotation
0003723 // RNA binding // inferred from electronic annotation /// 0004518 // nuclease activity // inferred from electronic annotation /// 0004519 // endonuclease activity // inferred from electronic annotation /// 0004540 // ribonuclease activity // traceable author statement /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0033897 // ribonuclease T2 activity // inferred from electronic annotation
AA007264_at
AA007264
Homo sapiens
Mar 11, 2009
Exemplar sequence
GenBank
zh97e06.r1 Soares fetal liver spleen 1NFLS S1 Homo sapiens cDNA clone 429250 5'.
AA007264
ubiquitin specific peptidase 39
USP39
10713
NM_006590
0000245 // spliceosome assembly // traceable author statement /// 0006397 // mRNA processing // traceable author statement /// 0006397 // mRNA processing // inferred from electronic annotation /// 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0008380 // RNA splicing // traceable author statement /// 0008380 // RNA splicing // inferred from electronic annotation
0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation
0004221 // ubiquitin thiolesterase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation
AA007282_at
AA007282
Homo sapiens
Mar 11, 2009
Exemplar sequence
GenBank
zh97b10.r1 Soares fetal liver spleen 1NFLS S1 Homo sapiens cDNA clone 429211 5'.
AA007282
AA007583_at
AA007583
Homo sapiens
Mar 11, 2009
Exemplar sequence
GenBank
zh99d03.r1 Soares fetal liver spleen 1NFLS S1 Homo sapiens cDNA clone 429413 5'.
AA007583
CDNA FLJ54919 complete cds, highly similar to G2 and S phase expressed protein 1
GTSE1
51512
NM_016426
0000085 // G2 phase of mitotic cell cycle // non-traceable author statement /// 0006977 // DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest // non-traceable author statement /// 0007017 // microtubule-based process // non-traceable author statement
0005737 // cytoplasm // inferred from electronic annotation /// 0005874 // microtubule // inferred from electronic annotation /// 0005881 // cytoplasmic microtubule // non-traceable author statement
AA009602_at
AA009602
Homo sapiens
Mar 11, 2009
Exemplar sequence
GenBank
ze82e10.r1 Soares fetal heart NbHH19W Homo sapiens cDNA clone 365514 5'.
AA009602
AA009826_at
AA009826
Homo sapiens
Mar 11, 2009
Exemplar sequence
GenBank
ze82b02.r1 Soares fetal heart NbHH19W Homo sapiens cDNA clone 365451 5'.
AA009826
Chromosome 9 open reading frame 21, mRNA (cDNA clone MGC:168115 IMAGE:9020492)
C9orf21
195827
NM_153698
AA009913_at
AA009913
Homo sapiens
Mar 11, 2009
Exemplar sequence
GenBank
ze83f05.r1 Soares fetal heart NbHH19W Homo sapiens cDNA clone 365601 5'.
AA009913
DPH2 homolog (S. cerevisiae)
DPH2
1802
NM_001039589 /// NM_001384
0005515 // protein binding // inferred from electronic annotation
AA010324_at
AA010324
Homo sapiens
Mar 11, 2009
Exemplar sequence
GenBank
zi09c03.r1 Soares fetal liver spleen 1NFLS S1 Homo sapiens cDNA clone 430276 5'.
AA010324
AA010686_at
AA010686
Homo sapiens
Mar 11, 2009
Exemplar sequence
GenBank
ze19a12.r1 Soares fetal heart NbHH19W Homo sapiens cDNA clone 359422 5'.
AA010686
CCR4-NOT transcription complex, subunit 2
CNOT2
4848
NM_014515
0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006358 // regulation of transcription from RNA polymerase II promoter, global // non-traceable author statement /// 0045449 // regulation of transcription // inferred from electronic annotation
0005634 // nucleus // non-traceable author statement /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation
0005515 // protein binding // inferred from physical interaction /// 0016455 // RNA polymerase II transcription mediator activity // traceable author statement /// 0030528 // transcription regulator activity // inferred from electronic annotation
AA010750_at
AA010750
Homo sapiens
Mar 11, 2009
Exemplar sequence
GenBank
ze22c01.r1 Soares fetal heart NbHH19W Homo sapiens cDNA clone 359712 5'.
AA010750
LAG1 homolog, ceramide synthase 2
LASS2
29956
NM_022075 /// NM_181746
0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0008610 // lipid biosynthetic process // inferred from electronic annotation /// 0030148 // sphingolipid biosynthetic process // inferred from electronic annotation /// 0046513 // ceramide biosynthetic process // inferred from electronic annotation
0005634 // nucleus // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031965 // nuclear membrane // inferred from electronic annotation
0003677 // DNA binding // inferred from electronic annotation /// 0003700 // transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0050291 // sphingosine N-acyltransferase activity // inferred from electronic annotation
AA010762_at
AA010762
Homo sapiens
Mar 11, 2009
Exemplar sequence
GenBank
ze22d07.r1 Soares fetal heart NbHH19W Homo sapiens cDNA clone 359725 5' similar to gb:L06419 PROCOLLAGEN-LYSINE,2-OXOGLUTARATE 5-DIOXYGENASE PRECURSOR (HUMAN);.
AA010762
procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3
PLOD3
8985
NM_001084
0006464 // protein modification process // traceable author statement /// 0019538 // protein metabolic process // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation
0005783 // endoplasmic reticulum // traceable author statement /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030867 // rough endoplasmic reticulum membrane // inferred from electronic annotation
0005506 // iron ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008475 // procollagen-lysine 5-dioxygenase activity // traceable author statement /// 0008475 // procollagen-lysine 5-dioxygenase activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016702 // oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen // inferred from electronic annotation /// 0016706 // oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors // inferred from electronic annotation /// 0031418 // L-ascorbic acid binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation
AA010933_s_at
AA010933
Homo sapiens
Mar 11, 2009
Exemplar sequence
GenBank
ze23a09.r1 Soares fetal heart NbHH19W Homo sapiens cDNA clone 359800 5'.
AA010933
AA011243_s_at
AA011243
Homo sapiens
Mar 11, 2009
Exemplar sequence
GenBank
ze19d03.r1 Soares fetal heart NbHH19W Homo sapiens cDNA clone 359429 5'.
AA011243
AA011452_at
AA011452
Homo sapiens
Mar 11, 2009
Exemplar sequence
GenBank
zi01e06.r1 Soares fetal liver spleen 1NFLS S1 Homo sapiens cDNA clone 429538 5' similar to contains Alu repetitive element;.
AA011452
exosome component 6
EXOSC6
118460
NM_058219
0006364 // rRNA processing // inferred from electronic annotation /// 0006396 // RNA processing // inferred from electronic annotation
0000178 // exosome (RNase complex) // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation
0000175 // 3'-5'-exoribonuclease activity // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0004518 // nuclease activity // inferred from electronic annotation /// 0004527 // exonuclease activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation
Total number of rows: 8934 Table truncated, full table size 7614 Kbytes .
Supplementary data files not provided