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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Dec 08, 2009 |
| Title |
Rosetta/Merck Mouse 23.6K 3.0 A1 microarray |
| Technology type |
spotted oligonucleotide |
| Distribution |
custom-commercial |
| Organism |
Mus musculus |
| Manufacturer |
Rosetta/Merck |
| Manufacture protocol |
Oligonucleotide array on glass.
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| |
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| Description |
Contains 60-mer probes (60-mer).
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| |
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| Web link |
http://www.rii.com
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| Contributor(s) |
Kulkarni A, Castle J |
| Submission date |
Dec 01, 2009 |
| Last update date |
Jan 18, 2013 |
| Contact name |
Amit V Kulkarni |
| E-mail(s) |
amit_kulkarni@merck.com
|
| Phone |
206-802-7352
|
| Organization name |
Rosetta Inpharmatics / Merck Pharmaceuticals
|
| Department |
Genomics
|
| Lab |
Array Design
|
| Street address |
401 Terry Ave N
|
| City |
Seattle |
| State/province |
WA |
| ZIP/Postal code |
98109 |
| Country |
USA |
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| Samples (30)
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GSM548033, GSM548034, GSM548035, GSM548036, GSM548037, GSM548038
GSM548039, GSM548040, GSM610926, GSM610927, GSM610928, GSM610929, GSM610930, GSM610931, GSM610932, GSM610933, GSM610934, GSM610935, GSM610936, GSM610937, GSM610938, GSM610939, GSM610940, GSM610941, GSM610942, GSM610943, GSM610944, GSM610945, GSM610946, GSM610947
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| Series (2) |
| GSE22058 |
miR-122 as a Regulator of Mitochondrial Metabolic Gene Network in Hepatocellular Carcinoma |
| GSE24819 |
Expression data from mouse model of plaque regression |
|
| Data table header descriptions |
| ID |
Rosetta generated unique probe identifier |
| EntrezGeneID |
Entrez Gene identifier for the gene represented |
| GeneSymbol |
Gene symbol for the gene represented |
| GB_ACC |
GenBank Accession |
| PROBE_DERIVED_FROM_TRANSCRIPT |
Actual transcript sequence from which the probe was derieved |
| SPOT_ID |
|
| RosettaGeneModelID |
Rosetta internal gene identifier. |
| SEQUENCE |
|
| ORF |
|
| Data table |
| ID |
EntrezGeneID |
GeneSymbol |
GB_ACC |
PROBE_DERIVED_FROM_TRANSCRIPT |
SPOT_ID |
RosettaGeneModelID |
SEQUENCE |
ORF |
| 10028673498 |
258868 |
Olfr894 |
NM_146868 |
NM_146868 |
|
MMG00260369 |
TATGAGTTATATTGCAGTGGGTACAGCTATCATTTTATGTAGCCTCATTATCTTAGTCTC |
258868 |
| 10024401266 |
319262 |
Fchsd1 |
NM_175684 |
non-public |
|
MMG00294916 |
AATTTGGGGGCCATGTTGGAGTCTTCCCATCTCTCCTGGTAGAGGAACTGCTTGGTCCCC |
319262 |
| 10023852086 |
14411 |
Slc6a12 |
M97632 |
M97632 |
|
MMG00232786 |
ACAATGTCTACATGTATCCTTCTTGGGGATACTCCATTGGATGGCTCTTGGCTTTCTCCT |
14411 |
| 10018191373 |
74237 |
Tubgcp2 |
AK006233 |
AK006233 |
|
MMG00246442 |
GGTGGCCATTCCTGCGCAATGAGCTCACTTGTTAAATATCATTATTTCTGGAACATGGCT |
74237 |
| 10024395306 |
258944 |
Olfr351 |
NM_146942 |
non-public |
|
MMG00209498 |
TATGGAACACTCTTCAGTGCCTACTTATGCCCTCCCTCTGTAGTCTCTACAGAAAAGGAT |
258944 |
| 10024393448 |
69747 |
Zswim7 |
XM_126343 |
non-public |
|
MMG00262548 |
TGGGAGAATTAAGTATTGTTGACTCAAATAAAGCCTGAGCCATGTTGTATCTGCAATCAG |
69747 |
| 10028671650 |
22688 |
Zfp26 |
AK088584 |
AK088584 |
|
MMG00325024 |
GCATAAACCATCTTTGCATCCCATTTATAAAATCAGTCTTGATCACAGTTTTTATGGTCC |
22688 |
| 10018179869 |
72934 |
2900006G07Rik |
AK013492 |
AK013492 |
|
MMG00286603 |
GGAAGAAGGCATAGGTTACAATTTGATTTCACTTAGACAAGAAGCTTGTTTTCTGAAAAG |
72934 |
| 10018174227 |
70118 |
Srrd |
AK012640 |
AK012640 |
|
MMG00237732 |
TTGAGGAAAGGTTGTTGGCGAGGATTCTGCAGGAAAATTACCCCTACATTGCAAAGGTGT |
70118 |
| 10028669991 |
|
|
|
non-public |
ENSEMBLE: ENSMUST00000096296 |
MMG00221331 |
TTGTTTTCCACAAAGCCAACAACTTCATGTATCTGAAGATATAAAATGGGATACAGGGGG |
|
| 10024394851 |
101476 |
Plekha1 |
NM_133942 |
non-public |
|
MMG00324065 |
TCTCTGTATGTCCAGTCGGTGGAACACTGTAATGACTTGAGAATAAACTGCCCAGAGTTC |
101476 |
| 10018195277 |
27998 |
Exosc5 |
AK007372 |
AK007372 |
|
MMG00303679 |
CATTCTAGGCCTGGGTATAACCCTCCCTTCATCAGGATACCATTAAAAAGGGCTCCCCCG |
27998 |
| 10018185620 |
68044 |
Chac2 |
NM_026527 |
NM_026527 |
|
MMG00263065 |
GCAGGTCTCAATTAACTTCCTGTTTCTATTAGAATAACCATGGTTTGTTGTACGTAAGTT |
68044 |
| 10024408967 |
18599 |
Padi1 |
NM_011059 |
non-public |
|
MMG00229467 |
GGGTCCTGGCTGACTGGCCACCGTCTTTCTCATCAATAAAAACATCGTTGTGCATTCTTA |
18599 |
| 10028670639 |
|
|
AK017478 |
AK017478 |
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MMG00268575 |
TAGCCTAGCCTAAGATCTTAAGCGAGAATGATGGGTAAGACATGGGGCTACTAACATGAC |
|
| 10028674839 |
18857 |
Pmp2 |
|
non-public |
ENSEMBLE: ENSMUST00000029034 |
MMG00217170 |
GGGGTGGGGTTCCTTGTTTCAGCCAACAGGAGCAGCCTCTATTCCACTTGGCCAAAGTTT |
18857 |
| 10024873992 |
212307 |
Mapre2 |
NM_153058 |
non-public |
|
MMG00294931 |
TTACCCATCTACTGTCGCATGGTAGGATAGCTTTTTGTCTCTGAATATGTGAATAACTTG |
212307 |
| 10028673898 |
435206 |
Taar7d |
|
non-public |
ENSEMBLE: ENSMUST00000070471 |
MMG00321439 |
GTGGGTGTCAAATCGCAGTGAATCAAACCTGGGTCTTCATCAATTTCCTATTATTTCTTA |
435206 |
| 10018195549 |
20315 |
Cxcl12 |
NM_021704 |
non-public |
|
MMG00233214 |
CGGTGTATTTTTCCACTTGGAATGAAATTGTATCAACTGTGACATTATATGCACTAGCAA |
20315 |
| 10024398772 |
216622 |
4931440F15Rik |
NM_176829 |
non-public |
|
MMG00266219 |
ACCAATACCTTCAAAAAGACTGCCTATGAGCTGCTGGACTCGAAGCTGTTGGCCAAGAGC |
216622 |
Total number of rows: 23652
Table truncated, full table size 2913 Kbytes.
| Supplementary file |
Size |
Download |
File type/resource |
| GPL9733_probe_seq.txt.gz |
523.0 Kb |
(ftp)(http) |
TXT |
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