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Platform GPL9296 Query DataSets for GPL9296
Status Public on Jul 28, 2010
Title GenAu MB BCELL v4.0
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Mus musculus
Manufacturer NimbleGen
Manufacture protocol as described in www.nimblegen.com
 
Description genomic regions of potential pax5 target genes from mm8
including IGH and surrounding genes
isothermal tiling oligos at 100bp

Native NimbelGen files (ndf, pos) linked below as supplementary files.
 
Contributor(s) McManus S
Submission date Sep 25, 2009
Last update date Jul 28, 2010
Contact name Meinrad Busslinger
E-mail(s) busslinger@imp.ac.at
Phone 00431-79730
Organization name Instutute of Molecular Pathology
Street address Dr. Bohrgasse 7
City Vienna
ZIP/Postal code 1030
Country Austria
 
Samples (6) GSM456495, GSM456496, GSM456497, GSM456498, GSM456499, GSM456500
Series (1)
GSE18278 IGH analysis in pro-B cells with H3K4me3, H3K4me2 and H3K9ac

Data table header descriptions
ID
CHROMOSOME Chromosomal location (NCBI mouse build build 36)
RANGE_GB ACCESSION.VERSION
Position Chromosomal position (NCBI mouse build build 36)
SEQUENCE Sequence of oligo
LENGTH oligo probe length
RANGE_START the start position (relative to the RANGE_GB accession)
RANGE_END the end position (relative to the RANGE_GB accession)

Data table
ID CHROMOSOME RANGE_GB Position SEQUENCE LENGTH RANGE_START RANGE_END
MB4_0755_0997 chr1 NC_000067.4 21285079 AAAGAGGAGACAGTCTAATAAAGGAAAAGTTGCTCCCACAGTGTCCAGAG 50 21285079 21285128
MB4_0046_0288 chr1 NC_000067.4 21285174 CCTGAGTTGTTGAACAATTAGTTAATGTGTTTAATCTCGAGTGCTGTCAGCCAAAAGCT 59 21285174 21285232
MB4_0233_0925 chr1 NC_000067.4 21285289 GAAACTTCCTGTGAGGTTTCATGGGTAGCAGGCAAGGGCTAAAGA 45 21285289 21285333
MB4_0438_0910 chr1 NC_000067.4 21285364 AGATGCTACGAAGAGCATGTAGATGCCAGTAGGGAGAACTTCTGTT 46 21285364 21285409
MB4_0244_0584 chr1 NC_000067.4 21285474 ATGGCTGCCCTGGATTTTACCTTCTACCCAAAAGGCCTTTGCATG 45 21285474 21285518
MB4_0507_0141 chr1 NC_000067.4 21285579 TGTCTTGAATTATTTTCACTTGTGTTTTATATTTTTATATAACATGAACATGATATGTTCA 61 21285579 21285639
MB4_0715_0847 chr1 NC_000067.4 21285664 ACGTGTCAAGTCCCTGAAAACAAGCACAAAATATGTCCTTAGTACGTACTCAGTGAA 57 21285664 21285720
MB4_0129_0225 chr1 NC_000067.4 21285789 TTTTCACTCATCAATTGCCACTTTTTGTCAACTATACTATAGAGTAAGTTATCATGTGTCC 61 21285789 21285849
MB4_0099_0957 chr1 NC_000067.4 21285864 ACCCATGTCCAAATCCCAGGATATTGTAAATATGAATTGAATTTGAAAGGGTTT 54 21285864 21285917
MB4_0382_0108 chr1 NC_000067.4 21285964 TCTTCATAAAACTTTCAATCTGGTGGTAGGCATCTCCACAGAAGCAGAAGGAA 53 21285964 21286016
MB4_0136_0626 chr1 NC_000067.4 21286064 ATTTTCTACCAACATCTTCCCTGAATTCATTATACATATACGGGTGTTTTGTCTGAA 57 21286064 21286120
MB4_0218_0248 chr1 NC_000067.4 21286473 TGGTCTTATACCTTCTAAGGGATGATGGGGTGTGAGATGACAATTCACAG 50 21286473 21286522
MB4_0435_0267 chr1 NC_000067.4 21286583 ATAGCCTGACCACGGCCACCATGGCCAATTCCCACAGATAAAGTT 45 21286583 21286627
MB4_0459_0361 chr1 NC_000067.4 21286688 CACACAGTAACAGCCTGGGCTCAGAGACGGAGAGAGGGTGGATAC 45 21286688 21286732
MB4_0467_0831 chr1 NC_000067.4 21286783 GATCTGTGTCCTCATCCACTCTCCTTCCCTGTAATATAATAACCTAAAGGAAGTTCT 57 21286783 21286839
MB4_0122_0700 chr1 NC_000067.4 21286888 ATAACACTGTTCAAAAATTCCTTCCCTTTAATATGTGAAAGGCATTAGATAGGG 54 21286888 21286941
MB4_0443_0843 chr1 NC_000067.4 21286988 AAAGAAGATTCAGCCAAGAGTGACCAGATGCACTTCATTCTGCCCT 46 21286988 21287033
MB4_0236_0954 chr1 NC_000067.4 21287068 ATGTCAAAAGGGATGGTTAAACAGTGCTGACTGTACTGAAACGTTCTGTGTCTTCTT 57 21287068 21287124
MB4_0628_0754 chr1 NC_000067.4 21287168 AAACCTCTTAGTAGCCACTCTGAGATTTGAGCAAACAAGCCTCAGG 46 21287168 21287213
MB4_0659_0179 chr1 NC_000067.4 21287378 TTCTCATTAGTCGATATAGAATCCTAGCGAGCCATTGGCATGCATCACTGAA 52 21287378 21287429

Total number of rows: 72886

Table truncated, full table size 8275 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary file Size Download File type/resource
GPL9296_MB4.ndf.gz 3.1 Mb (ftp)(http) NDF
GPL9296_MB4.pos.gz 673.7 Kb (ftp)(http) POS

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