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Status
Public on Jan 18, 2004
Title
UCSF elegans_mod 19K array
Technology type
spotted DNA/cDNA
Distribution
non-commercial
Organism
Caenorhabditis elegans
Description
We used the Research Genetix primer pair set to create about 19 thousand PCR products, using C. elegans genomic DNA as template. We printed these PCR products at high density on polylysine-coated glass slides, closely adhering to protocols available at http://microarrays.org.
Contributor(s)
Murphy CT , McCarroll SA , Dillin A , Lehrer-Graiwer J Submission date
Jan 08, 2004
Last update date
May 26, 2005
Contact name
Coleen T Murphy
E-mail(s)
cmurphy@worms.ucsf.edu Phone
415-341-8864
Organization name
University of California, San Francisco
Department
Biochemistry Department
Lab
Kenyon lab
Street address
City
San Francisco
State/province
CA
ZIP/Postal code
94143
Country
USA
Samples (7)
GSM15008 , GSM15009 , GSM15010 , GSM15011 , GSM15012 , GSM15013
Series (1)
GSE946 C. elegans heat stress time course
Data table header descriptions ID Genepairs_name Research Genetix name for this primer pair
ORF Gene we expect this probe to interrogate (based on our analysis of primer sequence)
Forward_primer Sequence of forward primer used to make PCR amplicon probe
Reverse_primer Sequence of reverse primer used to make PCR amplicon pro
Data table ID Genepairs_name ORF Forward_primer Reverse_primer 1.1.1
K10E9.1
K10E9.1 CATGGAAGCCCTACGGAATA
TGATGATCTCGTGAAGCTCG
1.2.1
F56C11.1
F56C11.1 TAAAGCAACTGGAAATGGGC
CTTCGAATTCACCGCATTTT
1.3.1
F56C11.3
F56C11.3 TTTGGGCTTTAAAAATCAAGACA
ATCACATCTCGACACTCGAACTT
1.4.1
F56C11.6
F56C11.6 TCGTAGACCATCTGCAGCAC
AGGCTTCGCTGTTCACTCAT
1.5.1
F53G12.2
F56C11.1 CTTCACACCGTTGGACATTG
GGTCTTCCACGTTCTTGAGC
1.6.1
F53G12.4
F53G12.4 TGCGTTTTTCACGTTCAGAG
ACGTGTCACCCATAGCATGA
1.7.1
Y73A3A.1
ZC123.3 ACCACCAATGATGCCAGATT
GGAAAAGGGCGACACAATAA
1.8.1
ZC123.2
ZC123.3 CAGCAATTTTTCGACAAGCA
GTCGCGAACGTCTTATCACA
1.9.1
ZC123.4
ZC123.4 GATGAACGACAACTCCCGAT
CTGAAACCATGTCAACCGTG
1.10.1
Y95B8A_82.a
Y95B8A.9 TTTGATCTACTAAAAATGCGGGA
AAAAACTCGGAAAACTCTTCCAC
1.11.1
Y95B8A_84.a
Y95B8A.11 TCAATTTTTAACGAGAAAAGCCA
TGTACTCCTCTCGGACATTGATT
1.12.1
Y95B8A_84.c
Y95B8A.10 CAATTTTCACACAAAAACTGCAA
ATAAAATTCGGCCACCAACTTAT
1.13.1
C41D7.2
GGCAAATCAATTTCTTCGGA
CGCTGGCAGTTATCACAGAA
1.14.1
T01A4.2
T01A4.2 TTTATTGGTATTTCGGGACCTTT
TCATTTTTGTTGTTCACGTCTTG
1.15.1
D1007.1
D1007.1 GCCGGATCTGTTTTGGATAA
AAGTGCCGTAAAAATGGGTG
1.16.1
D1007.3
D1007.3 AACAGAGTTCACTTTGTCCTTCG
GGAAGAAAGAAAATGGCAAACTT
1.17.1
D1007.5
D1007.5 AGAGCGAGTGGTGTAACGCT
AATCGATCGGTGAATTTTGC
1.18.1
D1007.7
D1007.7 TCAGTGCAAGCCAGATCAAC
TTGGTTGAGGCCTGAGAGAT
1.19.1
C10H11.6
C10H11.6 TTCACTCACCTGCTTATGCG
TTGAAATTGAAGCACGTGGA
1.20.1
C10H11.8
C10H11.8 TGAGCGGTTTTATGTGACCA
GCATCCCCTATCAGCTTGAA
19200 1306 Kbytes .Supplementary data files not provided
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