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Status
Public on Jan 02, 2004
Title
Agilent-012106 Rice Oligo Microarray G4138A (Feature Number version)
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Oryza sativa Japonica Group
Manufacturer
Agilent Technologies
Manufacture protocol
see manufacturer's web site at http://www.agilent.com/
Catalog number
G4138A
Description
This array will enable researchers to simultaneously characterize thousands of rice genes associated with biological functions, growth processes, and biotic and abiotic stress response. Probes on this array are designed to selections from the extensive rice (japonica) cDNA library of Japans National Institute of Agrobiological Sciences. Arrays of this design have barcodes that begin with 16012106 or 2512106. Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. The ID column represents the Agilent Feature Extraction feature number. Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface). To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions. *** A different version of this platform with the Agilent Probe names in the ID column is assigned accession number GPL7268.
Submission date
Jan 02, 2004
Last update date
Dec 06, 2012
Organization
Agilent Technologies
E-mail(s)
cag_sales-na@agilent.com
Phone
877-424-4536
URL
http://www.agilent.com
Department
Street address
City
Palo Alto
State/province
CA
ZIP/Postal code
94304
Country
USA
Samples (216)
GSM99300 , GSM99307 , GSM99308 , GSM99309 , GSM99402 , GSM99403
GSM99404 ,
GSM99405 ,
GSM99406 ,
GSM99407 ,
GSM99408 ,
GSM99409 ,
GSM119715 ,
GSM119717 ,
GSM119718 ,
GSM119719 ,
GSM130785 ,
GSM132685 ,
GSM132686 ,
GSM132687 ,
GSM132688 ,
GSM132689 ,
GSM132690 ,
GSM132691 ,
GSM132692 ,
GSM132693 ,
GSM132694 ,
GSM132695 ,
GSM137314 ,
GSM137315 ,
GSM137316 ,
GSM137317 ,
GSM139036 ,
GSM139037 ,
GSM139038 ,
GSM139039 ,
GSM139040 ,
GSM139041 ,
GSM142290 ,
GSM142291 ,
GSM142292 ,
GSM142293 ,
GSM142294 ,
GSM142295 ,
GSM142296 ,
GSM142297 ,
GSM142298 ,
GSM142299 ,
GSM142300 ,
GSM142301 ,
GSM142302 ,
GSM142313 ,
GSM142314 ,
GSM142315 ,
GSM142441 ,
GSM142442 ,
GSM142443 ,
GSM142444 ,
GSM142445 ,
GSM142446 ,
GSM143851 ,
GSM143853 ,
GSM143855 ,
GSM143858 ,
GSM143860 ,
GSM143861 ,
GSM146927 ,
GSM146928 ,
GSM146929 ,
GSM146930 ,
GSM146931 ,
GSM146932 ,
GSM152543 ,
GSM152544 ,
GSM152546 ,
GSM152548 ,
GSM152550 ,
GSM152552 ,
GSM172926 ,
GSM172977 ,
GSM172978 ,
GSM182342 ,
GSM182343 ,
GSM182344 ,
GSM182345 ,
GSM182346 ,
GSM182347 ,
GSM182348 ,
GSM182349 ,
GSM182370 ,
GSM182371 ,
GSM182372 ,
GSM182373 ,
GSM182374 ,
GSM182375 ,
GSM182392 ,
GSM182393 ,
GSM182394 ,
GSM182395 ,
GSM182396 ,
GSM182397 ,
GSM182398 ,
GSM182399 ,
GSM182400 ,
GSM182401 ,
GSM209844 ,
GSM209846 ,
GSM209849 ,
GSM209883 ,
GSM209884 ,
GSM210013 ,
GSM210024 ,
GSM210088 ,
GSM210089 ,
GSM210091 ,
GSM210105 ,
GSM210189 ,
GSM218545 ,
GSM218546 ,
GSM218782 ,
GSM218807 ,
GSM218808 ,
GSM218809 ,
GSM239984 ,
GSM239985 ,
GSM239986 ,
GSM239987 ,
GSM239988 ,
GSM239989 ,
GSM239991 ,
GSM239992 ,
GSM239993 ,
GSM239994 ,
GSM239995 ,
GSM239996 ,
GSM239997 ,
GSM239998 ,
GSM239999 ,
GSM240001 ,
GSM240002 ,
GSM240003 ,
GSM240004 ,
GSM240005 ,
GSM240006 ,
GSM240007 ,
GSM240008 ,
GSM240009 ,
GSM240010 ,
GSM240011 ,
GSM240012 ,
GSM240013 ,
GSM240014 ,
GSM240015 ,
GSM240016 ,
GSM240017 ,
GSM240018 ,
GSM240019 ,
GSM240020 ,
GSM240021 ,
GSM246366 ,
GSM246367 ,
GSM255008 ,
GSM255009 ,
GSM255010 ,
GSM255011 ,
GSM261333 ,
GSM261334 ,
GSM261335 ,
GSM261336 ,
GSM261337 ,
GSM261338 ,
GSM261339 ,
GSM261341 ,
GSM278514 ,
GSM278709 ,
GSM278710 ,
GSM278711 ,
GSM278712 ,
GSM278713 ,
GSM278714 ,
GSM278715 ,
GSM278716 ,
GSM281548 ,
GSM281551 ,
GSM281553 ,
GSM281555 ,
GSM281557 ,
GSM281558 ,
GSM281559 ,
GSM281560 ,
GSM281561 ,
GSM281562 ,
GSM281563 ,
GSM281564 ,
GSM281565 ,
GSM281566 ,
GSM365022 ,
GSM365023 ,
GSM365024 ,
GSM365025 ,
GSM377898 ,
GSM377899 ,
GSM377900 ,
GSM377901 ,
GSM377902 ,
GSM377903 ,
GSM655503 ,
GSM655504 ,
GSM655505 ,
GSM655506 ,
GSM655507 ,
GSM655508 ,
GSM845899 ,
GSM845904 ,
GSM845921 ,
GSM845922
Series (30)
GSE4409
Dissecting the rice genes responsible for long time changes of nitrogen supply forms and nitrogen starvation
GSE5286
Rice plants infected by Rice dwarf virus
GSE5853
Transcriptomic adaptations in rice suspension cells under sucrose starvation
GSE5906
Bacterial lipopolysaccharides induce defense responses associated with Programmed cell death in rice cell
GSE5978
Transcript profiling of drought responsiveness in two contrasting rice genotypes during vegetative stage stress
GSE6124
Comparative gene expression analysis between virus-susceptible and -resistant rice lines (TW16-4 and -69)
GSE6125
Comparative gene expression analysis between virus-susceptible and -resistant rice lines (TW16-1263 and -1029)
GSE6126
Comparative gene expression analysis between virus-susceptible and -resistant rice lines (NIL37 and NIL22)
GSE6187
Comparative gene expression analysis between Nipponbare and 6-4 under two conditions
GSE6244
Transcriptional profiling of indica rice cultivar IET8585 (Ajaya) infected with bacterial leaf blight pathogen (Xoo)
GSE6362
Transcriptional profiling of indica rice cultivar FR13A under submergence treatment.
GSE6600
Transcriptional profiling of indica rice cultivar FR13A under salt stress condition.
GSE7192
Identification of downstream genes regulated by OsMADS2
GSE7530
Gene expression profiles of various tissues under different physiological conditions
GSE7531
Differentially expressed genes from different developmantal stages in rice
GSE7532
Differentially expressed genes under different stress conditions in rice
GSE8518
Rice Gene Expression During Biotrophic Invasion by Magnaporthe oryzae (Agilent Array G4138A)
GSE8670
Analysis of the Interaction Transcriptome During Biotrophic Invasion of Rice by the Blast Fungus, Magnaporthe oryzae
GSE8811
Rice plants infested with planthoppers
GSE9450
Rice plants infected by Rice blast fungus
GSE9765
Microarray analysis of rice plants irradiated with carbon ion beams (HIMAC)
GSE10098
Identification of downstream genes regulated by RFL
GSE10335
Transcriptional profiling of shoot of OsPI1 knockdown rice
GSE11021
Gene Expression in Response to excess Copper Stress in Rice Leaves
GSE11157
Microarray analysis of rice plants fumigated with ozone
GSE11158
Microarray analysis of rice plants exposed to jasmonic acid (JA)
GSE14606
Transcriptome analysis of rice in relation to infection with rice tungro spherical virus (RTSV)
GSE15122
Gene expression of cytosolic glutamine synthetase 1;1 knock-out mutant rice
GSE26632
Transcriptome profiles of the rice coleoptile of wild type and reduced adh activity (rad) mutant
GSE34256
Global Identification of Potential Gene Biomarkers Associated with Ozone-induced Foliar Injury in Rice Seedling Leaves by Correlating their Symptom Severity with Transcriptome Profiling
Relations
Alternative to
GPL7268
Data table header descriptions
ID
Agilent feature number
COL
Column
ROW
Row
NAME
Name
SPOT_ID
Spot identifier
CONTROL_TYPE
Control type
GB_ACC
GenBankAccession
ACCESSION_STRING
Accession String
DESCRIPTION
Description
Data table
ID
COL
ROW
NAME
SPOT_ID
CONTROL_TYPE
GB_ACC
ACCESSION_STRING
DESCRIPTION
1
105
215
BrightCorner
BrightCorner
pos
2
105
214
NegativeControl
NegativeControl
neg
3
105
213
AK102367
A_71_P125991
FALSE
AK102367
gb|AK102367
Nicotiana tabacum NtPDR1 mRNA for pleiotropic drug resistance like protein, complete cds.|PLN
4
105
212
AK111026
A_71_P108945
FALSE
AK111026
gb|AK111026
Unknown expressed protein
5
105
211
AK105581
A_71_P121326
FALSE
AK105581
gb|AK105581
Glycine max receptor-like protein kinase 1 (RLK1) mRNA, complete cds.|PLN
6
105
210
E1A_r60_n9
E1A_r60_n9
pos
7
105
209
Pro25G
Pro25G
pos
8
105
208
AK063576
A_71_P127110
FALSE
AK063576
gb|AK063576
Arabidopsis thaliana mitochondrial chaperonin hsp60 (At3g23990) mRNA, complete cds.|PLN
9
105
207
AK067156
A_71_P106691
FALSE
AK067156
gb|AK067156
Arabidopsis thaliana clone C103146 unknown protein (At4g13040) mRNA, complete cds.|PLN
10
105
206
AK064389
A_71_P105376
FALSE
AK064389
gb|AK064389
Zea mays low molecular weight heat shock protein precursor (hsp22) mRNA, nuclear gene encoding mitochondrial protein, complete cds.|PLN
11
105
205
AK072154
A_71_P114922
FALSE
AK072154
gb|AK072154
Arabidopsis thaliana At2g29670/T27A16.23 mRNA, complete cds.|PLN
12
105
204
AK100418
A_71_P111881
FALSE
AK100418
gb|AK100418
Unknown expressed protein
13
105
203
AK111318
A_71_P118084
FALSE
AK111318
gb|AK111318
Unknown expressed protein
14
105
202
Pro25G
Pro25G
pos
15
105
201
AK061207
A_71_P115350
FALSE
AK061207
gb|AK061207
Arabidopsis thaliana unknown protein (At1g75170) mRNA, complete cds.|PLN
16
105
200
AK068804
A_71_P115554
FALSE
AK068804
gb|AK068804
Arabidopsis thaliana Unknown protein (At5g52540) mRNA, complete cds.|PLN
17
105
199
AK068476
A_71_P122209
FALSE
AK068476
gb|AK068476
Arabidopsis thaliana clone 11114 mRNA, complete sequence.|PLN
18
105
198
AK104152
A_71_P116328
FALSE
AK104152
gb|AK104152
Oryza sativa (japonica cultivar-group) OsPBA1 mRNA for beta 1 subunit of 20S proteasome, complete cds.|PLN
19
105
197
AK058848
A_71_P110945
FALSE
AK058848
gb|AK058848
Arabidopsis thaliana expressed protein (At1g08380) mRNA, complete cds.|PLN
20
105
196
AK100347
A_71_P110906
FALSE
AK100347
gb|AK100347
Arabidopsis thaliana Unknown protein (At3g27390) mRNA, complete cds.|PLN
Total number of rows: 22575 Table truncated, full table size 2631 Kbytes .
Supplementary file
Size
Download
File type/resource
GPL892_old_annotations.txt.gz
690.0 Kb
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TXT