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Platform GPL8781 Query DataSets for GPL8781
Status Public on Dec 31, 2009
Title NimbleGen-Fusarium verticillioides-13K genes-60-mer-v1
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Fusarium verticillioides
Manufacturer NimbleGen
Manufacture protocol High-density DNA array prepared with Maskless Array Synthesizer (MAS) technology. See manufacturer's website at http://www.nimblegen.com/.
 
Description Array was designed based on a large EST library (Brown et al, Analysis of 87,000 expressed sequence tags reveals alternatively spliced introns in multiple genes of the fumonisin gene cluster, Fungla Genetics and Biology, 42:848-861) and the Fusarium comparative database at the Broad Institute (http://www.broad.mit.edu/annotation/genome/fusarium_verticillioides/MultiHome.html).
 
Submission date Jun 30, 2009
Last update date Dec 31, 2009
Contact name Robert Butchko
E-mail(s) robert.butchko@ars.usda.gov, rbutchko@aggienetwork.com
Phone 309-681-6073
Organization name U.S. Dept. of Agriculture
Street address 1815 N. University St.
City Peoria
State/province IL
ZIP/Postal code 61606
Country USA
 
Samples (24) GSM423658, GSM423659, GSM423660, GSM423661, GSM423662, GSM423663 
Series (2)
GSE16900 Expression analysis of wild type Fusarium verticillioides cultured in liquid media
GSE21623 Heterologous expression analysis of wild type Fusarium fujikuroi and Ffvel1deletion strains grown under nitrogen-limiting conditions in liquid media over time.

Data table header descriptions
ID
Broad Institute ID Locus Number at The Broad Institute (http://www.broad.mit.edu/annotation/genome/fusarium_verticillioides/MultiHome.html)
SPOT_ID For SPOT_IDs lacking Broad Institute IDs, sequence information can be obtained from the depositor upon request.

Data table
ID Broad Institute ID SPOT_ID
SEQ0014723 --14723|0|0|FUM20EST|0|0000-00-00|Fverticillioides Genes.txt
SEQ0014724 FVEG_00326 FVEG_00326
SEQ0014725 --14725|0|0|FUM15coding|0|0000-00-00|Fverticillioides Genes.txt
SEQ0014726 --14726|0|0|FUM10coding|0|0000-00-00|Fverticillioides Genes.txt
SEQ0014727 FVEG_00315 FVEG_00315
SEQ0014728 FVEG_12137 FVEG_12137
SEQ0014729 FVEG_05853 FVEG_05853
SEQ0014730 FVEG_05854 FVEG_05854
SEQ0014731 FVEG_05855 FVEG_05855
SEQ0014732 FVEG_05857 FVEG_05857
SEQ0014733 FVEG_05861 FVEG_05861
SEQ0014734 FVEG_05863 FVEG_05863
SEQ0014735 FVEG_05864 FVEG_05864
SEQ0014736 FVEG_05865 FVEG_05865
SEQ0014737 FVEG_05868 FVEG_05868
SEQ0014738 FVEG_05869 FVEG_05869
SEQ0014739 FVEG_05870 FVEG_05870
SEQ0014740 FVEG_05872 FVEG_05872
SEQ0014741 FVEG_05876 FVEG_05876
SEQ0014742 FVEG_05879 FVEG_05879

Total number of rows: 13201

Table truncated, full table size 455 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary file Size Download File type/resource
GPL8781_2006-11-28_DB_expr.ndf.gz 20.9 Mb (ftp)(http) NDF
GPL8781_2006-11-28_DB_expr.ngd.gz 236.4 Kb (ftp)(http) NGD

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