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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Jan 23, 2010 |
| Title |
Lewis-Sigler Institute Saccharomyces 12K [20060831_PMC] |
| Technology type |
spotted oligonucleotide |
| Distribution |
non-commercial |
| Organisms |
Saccharomyces bayanus; Saccharomyces cerevisiae |
| Manufacturer |
Lewis-Sigler Institute Microarray Facility |
| Manufacture protocol |
The following parameters were used to manufacture the printed array named 20060831_PMC
Printer: Arrayer 250A
Array Configuration: (columns X rows) 48 sectors ( 4 X 12 spotted) Standard 48 tip
Spot Columns per Sector: 24
Spot Rows per Sector: 10
Column Spacing: 176
Row Spacing: 174
Plate Orientation: rotated 90 degrees clockwise (P1 top-left, A1 top-right)
Printhead Dip Dynamics: top to bottom, right to left
Sector Spotting Dynamics: left to right, top to bottom
Number of Slides: 220
Plates used in this print, in order.
PLATEID PLATENAME PLATE_VISITS IS_FLIPPED
100501 HYBRIDSB_2
100505 HYBRIDSB_6
100508 HYBRIDSB_9
100502 HYBRIDSB_3
100510 HYBRIDSB_11
100503 HYBRIDSB_4
100511 HYBRIDSB_12
100507 HYBRIDSB_8
100512 HYBRIDSB_13
100509 HYBRIDSB_10
100506 HYBRIDSB_7
100504 HYBRIDSB_5
100500 HYBRIDSB_1
100528 HYBRIDSC_16
100521 HYBRIDSC_9
100527 HYBRIDSC_15
100522 HYBRIDSC_10
100515 HYBRIDSC_3
100526 HYBRIDSC_14
100513 HYBRIDSC_1
100518 HYBRIDSC_6
100514 HYBRIDSC_2
100517 HYBRIDSC_5
100525 HYBRIDSC_13
100523 HYBRIDSC_11
100519 HYBRIDSC_7
100524 HYBRIDSC_12
100516 HYBRIDSC_4
100529 HYBRIDSC_17
100520 HYBRIDSC_8
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| Description |
SBSC multi-organism print
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| Submission date |
Jun 05, 2009 |
| Last update date |
Jan 23, 2010 |
| Contact name |
Maitreya J. Dunham |
| E-mail(s) |
maitreya@uw.edu
|
| Phone |
206-543-2338
|
| Organization name |
University of Washington
|
| Department |
Genome Sciences
|
| Lab |
Dunham Lab
|
| Street address |
Foege Building, S403B, Box 355065
|
| City |
Seattle |
| State/province |
WA |
| ZIP/Postal code |
98195-5065 |
| Country |
USA |
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| Samples (18)
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GSM415454, GSM415455, GSM415456, GSM415457, GSM415458, GSM415579
GSM415580, GSM415581, GSM415582, GSM415583, GSM415584, GSM415585, GSM415586, GSM415587, GSM415588, GSM415589, GSM415590, GSM415591
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| Series (2) |
| GSE16544 |
Systematic planning of genome-scale experiments in poorly studied species. |
| GSE47613 |
A New System for Comparative Functional Genomics of Saccharomyces Yeasts |
|
| Data table header descriptions |
| ID |
feature/spot number |
| ORF |
S. cerevisiae locus tag |
| Sbayanus_ORF |
ORF name from S. bayanus joint assembly available at: http://downloads.yeastgenome.org/sequence/fungal_genomes/S_bayanus/WashU/ |
| ORGANISM |
the organism of the spotted sequence |
| SEQUENCE |
oligonucleotide sequence |
| SPOT_ID |
|
| Data table |
| ID |
ORF |
Sbayanus_ORF |
ORGANISM |
SEQUENCE |
SPOT_ID |
| 1 |
|
650.17 |
Saccharomyces bayanus |
ACCTACTTTCTCAGAGGGCAACCGTGGAACAAAATCTATATCTTTTCTGGATCTTACATCTCCTGTGTCA |
650.17 |
| 2 |
|
670.7 |
Saccharomyces bayanus |
TTGGTCCTTCTATGGCAAAGAAATTGATGTTCGGATACTACAAACAGACCACTAATGCTAAATTCAACTG |
670.7 |
| 3 |
|
638.3 |
Saccharomyces bayanus |
ACCCCAATGATGTTGTTCGTCGCTAAGAAACCAGCCGAGGCTGAAACCTCCACCAAGACTTCTAAGAAAG |
638.3 |
| 4 |
|
638.37 |
Saccharomyces bayanus |
TGGAAGATTAGCAAATTTTAAGGACCGTTATAAACCACAACTAAACGAGTTATATGCACAACCTAAGAAC |
638.37 |
| 5 |
|
660.41 |
Saccharomyces bayanus |
AAGATGATGCGCAAACGGAAGACATCAACACATCTGAAAAGGTTGCGAGAGTGAGCAGTGTACCCAATAT |
660.41 |
| 6 |
|
493.2 |
Saccharomyces bayanus |
ATACATGTACAACATACCATAGATATAAATGCACGGCTTACCAGTATCATAGACTTCTTAGGGATCACTG |
493.2 |
| 7 |
|
572.11 |
Saccharomyces bayanus |
CAGATGGAGAGCACCTACGGTTGCTTGAACTATTAGCGGACTACAATTCCACTTTAGAGCAATTACAAAA |
572.11 |
| 8 |
|
575.4 |
Saccharomyces bayanus |
TGCCAGTGTATTGGATGACTACTTGTTAGAATCCGAATCCACCAACTCTTTATTATTGCTACGAGAAAAT |
575.4 |
| 9 |
|
605.7 |
Saccharomyces bayanus |
ATGTTTCCGAACTGAAGGCTGCTGGTGATATTTATTTTGAAATCTTCCATATTCAACCAACTGTATTGCA |
605.7 |
| 10 |
|
526.4 |
Saccharomyces bayanus |
CAATATGGGGGAACTATAGTTGGAGCGCTTCTTATAATCCTGACATTGATGAAAGTTCCCTTGCTTGCCA |
526.4 |
| 11 |
|
657.49 |
Saccharomyces bayanus |
ACAAAATGGTGTCTTCGGAAAGCAGTGGCAGTGACGTACAGACCGTTATCCAGAAAGCTTCGAAGCTGAT |
657.49 |
| 12 |
|
637.21 |
Saccharomyces bayanus |
TAAACAGTCTAACCAATACCAATAGTAATCACGACCAAGGAAGTTATGAAAAGATGACTAACCCTAACAA |
637.21 |
| 13 |
|
630.2 |
Saccharomyces bayanus |
ACTGGGCATACTGCATATCCCTATTTGTGTTACCTTTTCGTTCTTTAACCCTCAAGATACTGAAGAAAAT |
630.2 |
| 14 |
|
577.3 |
Saccharomyces bayanus |
TCGGTCATTGAGCGTAGCAGGCACTACAGCGATTTAACTTGTAGGAGAAATATTCGAATTTTAAGAACTA |
577.3 |
| 15 |
|
565.13 |
Saccharomyces bayanus |
GCATTATGCGTTGCTGCACAAAATACCAAACCTGAAAACGGTACATTAGAAGCTTTAGACAACCAAATCA |
565.13 |
| 16 |
|
605.17 |
Saccharomyces bayanus |
GGGTTCATCGGTGCTGCCCCCATGGCTGTTGTGCCTGCTGCGTTTGCCGATATGTTCGACACTAACGTGA |
605.17 |
| 17 |
|
631.44 |
Saccharomyces bayanus |
TACCCCTGCACCCTGGTCGACTGGCTGATCATCGTGGGCGTCACGCTGCCGGCGCTGTGCTACCTGTATC |
631.44 |
| 18 |
|
678.81 |
Saccharomyces bayanus |
ATCTTTTCTGCAACTTTCTCTATCGACCTGTTTGATAAACTATCCTCGTCTCATCAGGCTAGGAATAAAT |
678.81 |
| 19 |
|
572.9 |
Saccharomyces bayanus |
CATCAAGCTGGTCAAGAGAACTATGGACCCCGAGCAGCTCGGCCACGCCGCCAAGAGGCGCAAGCCATGA |
572.9 |
| 20 |
|
672.51 |
Saccharomyces bayanus |
GAAGGTACAACCTGGATCCTGATTTAAAATTCGCAGCTACACCACCCTATGACGGAACTTTGACGAAGTA |
672.51 |
Total number of rows: 11520
Table truncated, full table size 1231 Kbytes.
| Supplementary data files not provided |
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