GEO help: Mouse over screen elements for information.
Status
Public on May 29, 2009
Title
LC_miRMouse_10.0_070802-MA1002
Technology type
in situ oligonucleotide
Distribution
commercial
Organism
Mus musculus Manufacturer
LC Sciences
Manufacture protocol
Arrays are made based µParaflo microfluidic technology (Atactic Technologies). On the µParaflo microfluidic chip, each detection probe consists of a chemically modified nucleotide coding segment complementary to target microRNA (from miRBase, http://www.mirbase.org ) or other RNA (control or customer defined sequences) and a spacer segment of polyethylene glycol to extend the coding segment away from the substrate. The detection probes are made by in situ synthesis using PGR (photogenerated reagent) chemistry.
Catalog number
MA1002
Support
silicon
Description
Mouse miRNA microarray with 100% coverage of mature miRNAs listed in miRBase version 10.0
Web link
http://www.LCsciences.com Contributor(s)
Eicken C Submission date
May 27, 2009
Last update date
May 24, 2011
Contact name
Christoph Eicken
E-mail(s)
ceicken@lcsciences.com Phone
+1 (713) 664-7087
Organization name
LC Sciences, LLC
Street address
2575 W. Bellfort
City
Houston
State/province
TX
ZIP/Postal code
77054
Country
USA
Samples (22)
GSM412015 , GSM412016 , GSM412017 , GSM412018 , GSM412019 , GSM412020
GSM412021 ,
GSM412022 ,
GSM461668 ,
GSM461669 ,
GSM461670 ,
GSM461671 ,
GSM461672 ,
GSM461673 ,
GSM461674 ,
GSM461675 ,
GSM1585682 ,
GSM1585683 ,
GSM1585684 ,
GSM3037768 ,
GSM3037769 ,
GSM3037770 Series (4)
GSE16396 Differential microRNA expressions during development of mouse cornea
GSE18538 microRNA profiling of extraocular muscles
GSE65006 BDF1 wild type mice vs F33 (HIV-1 Tat-Tg- mice) - Differential thymic microRNA Expression
GSE111701 Differentially regulated miRNAs following murine femoral artery injury
Relations Alternative to
GPL13643
Data table header descriptions ID MetaRow MetaRow
MetaColumn MetaColumn
Row Row of the probe position on the chip
Column Column of the probe position on the chip
Reporter Identifier Reporter Name Name of the probe on the chip
Reporter BioSequence Database Entry[mirna] miRBase accession code of the targeted miRNA of the probe on the chip
Reporter BioSequence Type BioSequence type of the probe on the chip
Reporter BioSequence Polymer Type BioSequence polymer type of the probe on the chip
Reporter Group [role] General function of the particular probe on the chip: experimental / control
Reporter Control Type Specific function of the particular probe on the chip
Reporter Comment Target sequence (5' to 3') of the probe
miRNA_ID miRNA links in Entrez Gene
SPOT_ID controls
Data table ID MetaRow MetaColumn Row Column Reporter Identifier Reporter Name Reporter BioSequence Database Entry[mirna] Reporter BioSequence Type Reporter BioSequence Polymer Type Reporter Group [role] Reporter Control Type Reporter Comment miRNA_ID SPOT_ID 1
1
1
1
1
621
empty
Control
control_empty
Control
2
1
1
1
2
1
mmu-let-7a
MIMAT0000521
ss_oligo
DNA
Experimental
Target seq (5' to 3') UGAGGUAGUAGGUUGUAUAGUU
Mirnlet7a 3
1
1
1
3
65
mmu-miR-140*
MIMAT0000152
ss_oligo
DNA
Experimental
Target seq (5' to 3') UACCACAGGGUAGAACCACGG
Mirn140* 4
1
1
1
4
129
mmu-miR-196a*
MIMAT0004618
ss_oligo
DNA
Experimental
Target seq (5' to 3') UCGGCAACAAGAAACUGCCUGA
Mirn196a* 5
1
1
1
5
193
mmu-miR-27b*
MIMAT0004522
ss_oligo
DNA
Experimental
Target seq (5' to 3') AGAGCUUAGCUGAUUGGUGAAC
Mirn27b* 6
1
1
1
6
257
mmu-miR-325*
MIMAT0000558
ss_oligo
DNA
Experimental
Target seq (5' to 3') CCUAGUAGGUGCUCAGUAAGUGU
Mirn325* 7
1
1
1
7
321
mmu-miR-384-3p
MIMAT0001076
ss_oligo
DNA
Experimental
Target seq (5' to 3') AUUCCUAGAAAUUGUUCACAAU
Mirn384-3p 8
1
1
1
8
385
mmu-miR-471
MIMAT0002112
ss_oligo
DNA
Experimental
Target seq (5' to 3') UACGUAGUAUAGUGCUUUUCAC
Mirn471 9
1
1
1
9
449
mmu-miR-669c
MIMAT0003479
ss_oligo
DNA
Experimental
Target seq (5' to 3') AUAGUUGUGUGUGGAUGUGUGU
Mirn669c 10
1
1
1
10
513
mmu-miR-743b-3p
MIMAT0004840
ss_oligo
DNA
Experimental
Target seq (5' to 3') GAAAGACAUCAUGCUGAAUAGA
Mirn743b-3p 11
1
1
1
11
621
empty
Control
control_empty
Control
12
1
1
1
12
59
mmu-miR-137
MIMAT0000149
ss_oligo
DNA
Experimental
Target seq (5' to 3') UUAUUGCUUAAGAAUACGCGUAG
Mirn137 13
1
1
1
13
123
mmu-miR-193
MIMAT0000223
ss_oligo
DNA
Experimental
Target seq (5' to 3') AACUGGCCUACAAAGUCCCAGU
Mirn193 14
1
1
1
14
187
mmu-miR-26a
MIMAT0000533
ss_oligo
DNA
Experimental
Target seq (5' to 3') UUCAAGUAAUCCAGGAUAGGCU
Mirn26a 15
1
1
1
15
251
mmu-miR-322*
MIMAT0000549
ss_oligo
DNA
Experimental
Target seq (5' to 3') AAACAUGAAGCGCUGCAACAC
Mirn322* 16
1
1
1
16
315
mmu-miR-380-3p
MIMAT0000745
ss_oligo
DNA
Experimental
Target seq (5' to 3') UAUGUAGUAUGGUCCACAUCUU
Mirn380-3p 17
1
1
1
17
379
mmu-miR-467e
MIMAT0005293
ss_oligo
DNA
Experimental
Target seq (5' to 3') AUAAGUGUGAGCAUGUAUAUGU
Mirn467e 18
1
1
1
18
443
mmu-miR-666-3p
MIMAT0004823
ss_oligo
DNA
Experimental
Target seq (5' to 3') GGCUGCAGCGUGAUCGCCUGCU
Mirn666-3p 19
1
1
1
19
507
mmu-miR-720
MIMAT0003484
ss_oligo
DNA
Experimental
Target seq (5' to 3') AUCUCGCUGGGGCCUCCA
Mirn720 20
1
1
1
20
621
empty
Control
control_empty
Control
3968 462 Kbytes .Supplementary data files not provided
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