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Platform GPL7731

Query DataSets for GPL7731

Status

Public on Dec 03, 2008

Title

Agilent-019118 Human miRNA Microarray 2.0 G4470B (Feature Number version)

Technology type

in situ oligonucleotide

Distribution

custom-commercial

Organism

Homo sapiens

Manufacturer

Agilent Technologies

Manufacture protocol

see manufacturer's web site at http://www.agilent.com/

Catalog number

G4470B

Description

Agilent Human miRNA Microarray version 2 8x15K (G4470B) annotated against the Sanger miRBASE 12.0 database of miRNAs. The microarray is designed to contain probes specific for each of the human miRNAs in Sanger miRBASE 10.1, as well as probes specific to the human viral miRNAs in this database.

Arrays of this design have barcodes that begin with 16019118 or 2519118.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

*** A different version of this platform with the Agilent Probe names in the ID column is assigned accession number GPL8936

Submission date

Dec 03, 2008

Last update date

Jan 23, 2013

Organization

Agilent Technologies

E-mail(s)

cag_sales-na@agilent.com

Phone

877-424-4536

URL

http://www.agilent.com

Department

Street address

City

Palo Alto

State/province

ZIP/Postal code

94304

Country

USA

Samples (1192)

More...

GSM370546, GSM370547, GSM370548, GSM370549, GSM426427, GSM426441

Series (37)

More...

GSE14511	Quantification of synthetic miRNAs
GSE17037	MicroRNA expression analysis in Uveal melanoma from formalin fixed paraffin embedded sections
GSE18469	Adipocyte differentiation

GSE18470	miRNA expression profile of human subcutaneous adipose
GSE18894	Multi-component epigenetic control of pro-invasive genes in cancer cells (miRNA)
GSE18899	Multi-component epigenetic control of pro-invasive genes in cancer cells
GSE18999	Effects of exercise on miRNA expression level in human neutrophils
GSE19544	MicroRNA transcriptional profiling in serum-starved human aortic smooth muscle cells
GSE21126	Y79 retinoblastoma cells: control vs. curcumin treated
GSE23631	RCC cell lines and paired tumors
GSE23690	Study the role of miRNAs in metastasis progression of RCC cell lines
GSE23739	miRNA expressions in non-cancerous and cancerous human gastric tissues
GSE24109	Antagonistic role of MBNL1 and LIN28 promotes specific alteration of pre-miR-1 processing and is associated with heart defects in DM
GSE24201	miRNA profiling of HPCX1 linked prostate cancer patients and their healthy brothers
GSE24205	HPCX1 linked prostate cancer
GSE24428	MicroRNA expression profile in GlycophorinA positive cells of severe and intermedia Eb thalassemia
GSE25405	EMca: serous, endometrioid, normal (miRNA)
GSE25508	Integrative Analysis of microRNA, mRNA and DNA Copy Number Data Reveals Asbestos-Related Changes in Non-Small Cell Lung Cancer
GSE25590	miR-148b modulates the C1GALT1 expression explaining the abnormal glycosylation process in IgA Nephropathy
GSE25820	Global microRNA expression profiling of microdissected tissues from diseased and non-diseased pancreatic tissues
GSE31629	miRNA expression profiling in Adult T-cell Leukemia (ATL) cells and in Normal CD4+ T-cells
GSE33961	miRNA array in colorectal carcinoma
GSE34608	Gene and microRNA expression in pulmonary tuberculosis and sarcoidosis
GSE39163	MicroRNA miR-223 constrains lethal inflammation during Mycobacterium tuberculosis infection
GSE55021	miRNA and mRNA profiling of tumor-educated macrophages (miRNA 1)
GSE55024	miRNA and mRNA profiling of tumor-educated macrophages
GSE56663	miRNA expression of tube forming HUVECs
GSE64013	miR-130a activates apoptotic signaling through activation of caspase-8 in taxane-resistant prostate cancer cells [miRNA]
GSE64014	miR-130a activates apoptotic signaling through activation of caspase-8 in taxane-resistant prostate cancer cells.
GSE65203	microRNA as a new immune-regulatory agent in breast milk
GSE75669	miRNAs Expression of Mexican Patients with Breast Cancer
GSE75685	Mexican Patients with Breast Cancer
GSE78037	Effect of Imatinib (1microM, 24 hours) on the microRNA repertoire of chronic myeloid leukemia cell line K562
GSE92683	caArray_topal-00242: MicroRNA Analysis of TCGA Ovarian samples using Agilent MicroRNA array
GSE121481	microRNA profiles of hADSC during replicative senescence
GSE125884	Hypoxia-regulated miRNAs in Human Mesenchymal Stem Cells
GSE137130	MiRnome profiling of Human bladder cancer line invalidated for the MUC4 gene by ShRNA.

Relations

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Data table header descriptions
ID	Agilent feature number
COL	Column
ROW	Row
miRNA_ID
PROBE NAME	Spot identifier
CONTROL_TYPE	Control type
ACCESSION_STRING	Accession String
CHROMOSOMAL_LOCATION	Chromosomal Location
DESCRIPTION	Description
SPOT_ID

Data table
ID	COL	ROW	miRNA_ID	PROBE NAME	CONTROL_TYPE	ACCESSION_STRING	CHROMOSOMAL_LOCATION	DESCRIPTION	SPOT_ID
1	96	164		miRNABrightCorner30	pos				CONTROL
2	96	162		DarkCorner	pos				CONTROL
3	96	160	hsa-miR-152	A_25_P00012196	FALSE	mir\|hsa-miR-152\|mir\|MIMAT0000438	chr17:043469599-043469584	NA
4	96	158	hsa-miR-627	A_25_P00011031	FALSE	mir\|hsa-miR-627\|mir\|MIMAT0003296	chr15:040279096-040279076	NA
5	96	156	hsa-miR-15a*	A_25_P00013142	FALSE	mir\|hsa-miR-15a*\|mir\|MIMAT0004488	chr13:049521327-049521310	NA
6	96	154	hsa-miR-520e	A_25_P00010562	FALSE	mir\|hsa-miR-520e\|mir\|MIMAT0002825	chr19:058870834-058870850	NA
7	96	152	hsa-miR-632	A_25_P00011021	FALSE	mir\|hsa-miR-632\|mir\|MIMAT0003302	chr17:027701305-027701319	NA
8	96	150	hsa-miR-220a	A_25_P00010039	FALSE	mir\|hsa-miR-220a\|mir\|MIMAT0000277\|mir\|hsa-miR-220_v9.1	chrX:122523669-122523651	NA
9	96	148	ebv-miR-BART7	A_25_P00011717	FALSE	mir\|ebv-miR-BART7\|mir\|MIMAT0003416	unmapped	NA
10	96	146	hsa-miR-337-5p	A_25_P00012361	FALSE	mir\|hsa-miR-337-5p\|mir\|MIMAT0004695	chr14:100410609-100410625	NA
11	96	144	hsa-miR-921	A_25_P00013040	FALSE	mir\|hsa-miR-921\|mir\|MIMAT0004971	chr1:164390629-164390616	NA
12	96	142	hsa-miR-505*	A_25_P00013605	FALSE	mir\|hsa-miR-505*\|mir\|MIMAT0004776	chrX:138834008-138833992	NA
13	96	140		NA	ignore				-- ignore
14	96	138	hsa-miR-129-3p	A_25_P00012225	FALSE	mir\|hsa-miR-129-3p\|mir\|MIMAT0004605	chr11:043559580-043559597	NA
15	96	136	hcmv-miR-UL22A	A_25_P00011875	FALSE	mir\|hcmv-miR-UL22A\|mir\|MIMAT0001574	unmapped	NA
16	96	134	hsa-miR-489	A_25_P00010829	FALSE	mir\|hsa-miR-489\|mir\|MIMAT0002805\|mir\|hsa-miR-489_v9.1	chr7:092951256-092951239	NA
17	96	132	hsa-miR-553	A_25_P00011222	FALSE	mir\|hsa-miR-553\|mir\|MIMAT0003216	chr1:100519405-100519420	NA
18	96	130	hsa-miR-125b	A_25_P00010980	FALSE	mir\|hsa-miR-125b\|mir\|MIMAT0000423	chr11:121475710-121475695	NA
19	96	128	hsa-miR-219-2-3p	A_25_P00012279	FALSE	mir\|hsa-miR-219-2-3p\|mir\|MIMAT0004675	chr9:130194800-130194785	NA
20	96	126	hsa-miR-542-5p	A_25_P00012859	FALSE	mir\|hsa-miR-542-5p\|mir\|MIMAT0003340	chrX:133503074-133503055	NA

Total number of rows: 15744

Table truncated, full table size 1500 Kbytes.

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Supplementary data files not provided