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Platform GPL7542 Query DataSets for GPL7542
Status Public on Oct 30, 2008
Title Agilent-015072 Yeast Oligo Microarray 4x44K G2519F (Feature Number version)
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Saccharomyces cerevisiae
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
Catalog number G2519F
 
Description
This oligonucleotide microarray will enable researchers to simultaneously characterize expression of many thousands of yeast genes and identify gene activity during important biological processes, such as yeast growth, adaptation, response to drug candidates and reproduction.

Arrays of this design have barcodes that begin with 16015072 or 2515072.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

*** A different version of this platform with the Agilent Probe names in the ID column is assigned accession number GPL9294
 
Submission date Oct 30, 2008
Last update date Dec 06, 2012
Organization Agilent Technologies
E-mail(s) cag_sales-na@agilent.com
Phone 877-424-4536
URL http://www.agilent.com
Department
Street address
City Palo Alto
State/province CA
ZIP/Postal code 94304
Country USA
 
Samples (114) GSM339049, GSM339050, GSM339054, GSM339055, GSM341482, GSM341485 
Series (15)
GSE13435 The Repertoire and Dynamics of Evolutionary Adaptations to Controlled Nutrient-Limited Environments in Yeast
GSE13446 Mechanisms that specify promoter nucleosome location and identity
GSE13561 Transcriptional Control by the FATC Domain of Saccharomyces cerevisiae Tra1
Relations
Alternative to GPL9294

Data table header descriptions
ID Agilent feature number
COL Column
ROW Row
NAME Name
PROBE NAME Agilent Probe Name
CONTROL_TYPE Control type
GENE_SYMBOL Gene Symbol
ORF ORF Name
DESCRIPTION Description
SEQUENCE
SPOT_ID

Data table
ID COL ROW NAME PROBE NAME CONTROL_TYPE GENE_SYMBOL ORF DESCRIPTION SEQUENCE SPOT_ID
1 266 170 GE_BrightCorner GE_BrightCorner pos CONTROL
2 266 168 DarkCorner DarkCorner pos CONTROL
3 266 166 DarkCorner DarkCorner pos CONTROL
4 266 164 DarkCorner DarkCorner pos CONTROL
5 266 162 DarkCorner DarkCorner pos CONTROL
6 266 160 DarkCorner DarkCorner pos CONTROL
7 266 158 DarkCorner DarkCorner pos CONTROL
8 266 156 DarkCorner DarkCorner pos CONTROL
9 266 154 DarkCorner DarkCorner pos CONTROL
10 266 152 DarkCorner DarkCorner pos CONTROL
11 266 150 DarkCorner DarkCorner pos CONTROL
12 266 148 YLR315W A_06_P5132 FALSE NKP2 YLR315W BioProcess=biological_process unknown|MolFunction=molecular_function unknown|CellComponent=not yet annotated ACGAATCAAGCAGTTTTTCATAACGTTGCGCTCTAGATTACTGCGATTTCTGGAAAGCGA
13 266 146 YLR204W A_06_P5018 FALSE QRI5 YLR204W BioProcess=biological_process unknown|MolFunction=molecular_function unknown|CellComponent=not yet annotated TGCGGGTCCTACTTTAACAGAACCTTTCAAACAGCAATTAACACTACAATGCCTCCCATG
14 266 144 YCL017C A_06_P1570 FALSE NFS1 YCL017C BioProcess=iron homeostasis*|MolFunction=molecular_function unknown|CellComponent=mitochondrion GATGCATTAGCCCATTCTTCCATCAGATTTGGTATTGGTAGATTTAGTACTGAAGAGGAG
15 266 142 YKL024C A_06_P4432 FALSE URA6 YKL024C BioProcess=nucleobase, nucleoside, nucleotide and nucleic acid metabolism|MolFunction=uridine kinase|CellComponent=cytoplasm* AACATTGAGTCCATTAAGAAGAGATTTAACACTTTCAAGGAGACTAGTATGCCCGTCATC
16 266 140 YJR107W A_06_P4350 FALSE ORF:YJR107W YJR107W BioProcess=biological_process unknown|MolFunction=molecular_function unknown|CellComponent=not yet annotated TTGAATACCGTGGTAAAAATAACAGGTTAACTTTAAAGGATGGATTTCGAGAGGGTATGA
17 266 138 YHR087W A_06_P3662 FALSE ORF:YHR087W YHR087W BioProcess=biological_process unknown|MolFunction=molecular_function unknown|CellComponent=not yet annotated AGCTTGTAGACGAATATTTGAAAAATCCATCAATTGGTAAGCTATCTGAAGTTGTCGAAC
18 266 136 YIL055C A_06_P3855 FALSE ORF:YIL055C YIL055C BioProcess=biological_process unknown|MolFunction=molecular_function unknown|CellComponent=not yet annotated GGTTCCACGATAAAGAGCTGTCTGATTTGACGTTCGAATCCTTACAAGACCAGGAATATT
19 266 134 YNR010W A_06_P6121 FALSE CSE2 YNR010W BioProcess=transcription from Pol II promoter*|MolFunction=RNA polymerase II transcription mediator|CellComponent=mediator complex CAAATAAGGAAGGATCCAAACAATCTCTCAAATCAATTGGAAACCTTAACAGGTTCGATT
20 266 132 YOR068C A_06_P6430 FALSE ORF:YOR068C YOR068C BioProcess=biological_process unknown|MolFunction=molecular_function unknown|CellComponent=not yet annotated CACCGGATTCTCTTGTTGCAATAAATTGTGTAGTGCTATTCTTGAGATCAGCAATCGGAT

Total number of rows: 45220

Table truncated, full table size 9687 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary file Size Download File type/resource
GPL7542_old_annotations.txt.gz 2.2 Mb (ftp)(http) TXT

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