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Platform GPL7440 Query DataSets for GPL7440
Status Public on Oct 15, 2008
Title NuGO array (mouse) NuGO_Mm1a520177
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Mus musculus
Manufacturer Affymetrix
Manufacture protocol See manufacturer's web site
 
Description This array has been designed by NuGO and manufactured by Affymetrix.
NuGO is a European Union-funded Network of Excellence, the full title of which is 'The European Nutrigenomics Organisation: linking genomics, nutrition and health research'. This array contains aproximately 24.000 probesets, relevant to nutrigenomics studies.
More info:
http://www.nugo.org
http://blog.bigcat.unimaas.nl/~martijn/NuGO/index.html
 
Web link http://www.nugo.org
Contributor(s) van Iersel M, Koks PD, Elliott RM, Rocca-Serra P, Hooiveld GJ
Submission date Oct 07, 2008
Last update date Apr 08, 2013
Contact name Guido Hooiveld
E-mail(s) guido.hooiveld@wur.nl
Organization name Wageningen University
Department Div. Human Nutrition & Health
Lab Nutrition, Metabolism & Genomics Group
Street address HELIX, Stippeneng 4
City Wageningen
ZIP/Postal code NL-6708WE
Country Netherlands
 
Samples (365) GSM347149, GSM347157, GSM347158, GSM347159, GSM347598, GSM347599 
Series (12)
GSE13819 Identification of pathways and transcription factors relevant to gut inflammation and anti-inflammatory probiotics
GSE17863 mRNA profiling reveals divergent roles of PPARa and PPARß/d in regulating mouse liver gene expression (PPARa samples)
GSE17865 Transcriptional profiling reveals divergent roles of PPARa and PPARß/d in regulation of gene expression in mouse liver
Relations
Alternative to GPL7441
Alternative to GPL16983

Data table header descriptions
ID
Ensembl (primary)
Ensembl (secondary) ENSEMBL GENE IDENTIFIER
External name REPRESENTATIVE ID (RETRIEVED FROM ENSEMBL)
Description TITLE OF GENE REPRESENTED BY PROBESET (RETRIEVED FROM ENSEMBL)
Genbank
GB_LIST GENBANK ACCESSION NUMBER
Chromosome Number
Chromosome Length
Chromosome Coordinate
EC
Gene name REPRESENTATIVE ID (RETRIEVED FROM ENTREZ)
Gene Ontology GENE ONTOLOGY CONSORTIUM IDENTIFIERS
ORF
Organism
PFAM PROTEIN FAMILY IDENTIFIER
PROSITE PROTEIN DOMAINS, FAMILIES AND FUNCTIONAL SITES IDENTIFIER
REFSEQ
GB_LIST Genbank accession numbers
UNIGENE UNIGENE IDENTIFIER
SPOT_ID spot identifier

Data table
ID Ensembl (primary) Ensembl (secondary) External name Description Genbank GB_LIST Chromosome Number Chromosome Length Chromosome Coordinate EC Gene name Gene Ontology ORF Organism PFAM PROSITE REFSEQ GB_LIST UNIGENE SPOT_ID
1419318_at ENSMUSG00000040017 Saa4 Serum amyloid A-4 protein precursor (Amyloid A-5 protein). [Source:Uniprot/SWISSPROT;Acc:P31532] U65403 , BC019212 , U40397 , U02554 7 152524553 53983387 Serum amyloid A-4 protein precursor GO:0005319 /// GO:0005615 /// GO:0006953 /// GO:0005576 20211 mouse PF00277 PS00992 NM_011316 , NP_035446 Mm.3489 /// Mm.394591
1417466_at ENSMUSG00000026678 Rgs5 Regulator of G-protein signaling 5 (RGS5). [Source:Uniprot/SWISSPROT;Acc:O08850] U67188 , BC037683 , AK054098 , AK004165 , AK044096 1 197195432 171585632 Regulator of G-protein signaling 5 GO:0007186 /// GO:0009968 /// GO:0004871 /// GO:0005096 19737 mouse PF00615 NP_033089 , NM_009063 Mm.403072 /// Mm.465860 /// Mm.20954
1427071_at ENSMUSG00000028920 Fbxo42 F-box only protein 42. [Source:Uniprot/SWISSPROT;Acc:Q6PDJ6] BC003960 , AK173150 , AK028867 , AL607087 , AK171215 , BC058667 , AK165284 , AK170202 , AK150804 , AK151503 4 155630120 140703847 F-box only protein 42. GO:0005634 /// GO:0003677 /// GO:0006355 /// GO:0004879 /// GO:0006512 213499 mouse PF01344 /// PF07646 /// PF00646 NP_766106 , NM_172518 Mm.28865
1435213_at mouse 1435213_at
1449287_at ENSMUSG00000027579 Srms Tyrosine-protein kinase Srms (EC 2.7.10.2) (PTK70). [Source:Uniprot/SWISSPROT;Acc:Q62270] AK049582 , D26186 , D49427 , BC125325 , BC120633 , AL450341 2 181748087 180940268 EC 2.7.10.2 Tyrosine-protein kinase Srms GO:0004715 /// GO:0005524 /// GO:0016301 /// GO:0006468 /// GO:0004713 /// GO:0005515 /// GO:0004674 /// GO:0004672 /// GO:0000166 /// GO:0016740 20811 mouse PF07653 /// PF07714 /// PF00069 /// PF00018 /// PF00017 PS00109 /// PS00107 NM_011481 , NP_035611 Mm.4752
1419035_s_at ENSMUSG00000074698 Csnk2a1 Casein kinase II subunit alpha (EC 2.7.11.1) (CK II). [Source:Uniprot/SWISSPROT;Acc:Q60737] BC089343 , U51866 , BC060742 , U17112 , AK011501 , AL831735 , AK158077 , AK146032 , BC069919 , AK031617 , BC026149 2 181748087 152052618 EC 2.7.11.1 Casein kinase II subunit alpha GO:0005524 /// GO:0016301 /// GO:0005956 /// GO:0006468 /// GO:0019888 /// GO:0004713 /// GO:0005515 /// GO:0004674 /// GO:0004672 /// GO:0000166 /// GO:0016055 /// GO:0016740 /// GO:0008013 100039026 , 12995 mouse PF07714 /// PF00069 PS00108 /// PS00107 NP_031814 , NM_007788 Mm.298893 /// Mm.431633 /// Mm.23692 /// Mm.409916 /// Mm.401524
1426408_at ENSMUSG00000005506 ENSMUSG00000055178 Cugbp1 CUG-BP- and ETR-3-like factor 1 (CELF-1) (Bruno-like protein 2) (RNA- binding protein BRUNOL-2) (CUG triplet repeat RNA-binding protein 1) (CUG-BP1) (Deadenylation factor CUG-BP) (Deadenylation factor EDEN-BP) (50 kDa nuclear polyadenylated RNA-binding pr [Source:Uniprot/SWISSPROT;Acc:P28659] AB050499 , AF314172 , AK143698 , BC021393 , AK156725 , AK014492 , X61451 , AF267535 , AJ007987 , AL672241 , AK135030 2 181748087 90780554 CUG-BP- and ETR-3-like factor 1 GO:0006397 /// GO:0006376 /// GO:0005634 /// GO:0003723 /// GO:0042835 /// GO:0007286 /// GO:0005625 /// GO:0005737 /// GO:0003676 /// GO:0000166 /// GO:0040018 13046 mouse PF00076 NP_059064 , NM_017368 , NM_198683 , NP_941955 Mm.416039 /// Mm.393354 /// Mm.415775 /// Mm.409790
1456479_at ENSMUSG00000028385 Snx30 Sorting nexin-30. [Source:Uniprot/SWISSPROT;Acc:Q8CE50] AL831738 , BC099674 , AK165619 , AK170999 , AK029012 , AK170774 , AK147437 , AK076374 4 155630120 59818522 Sorting nexin-30. GO:0006810 /// GO:0007154 /// GO:0005737 /// GO:0035091 /// GO:0005515 /// GO:0007242 /// GO:0015031 209131 mouse PF00787 NM_172468 , NP_766056 Mm.259705 /// Mm.400955
1431863_at mouse 1431863_at
1428540_at ENSMUSG00000036667 3321401G04Rik RIKEN cDNA 3321401G04 gene (3321401G04Rik), mRNA [Source:RefSeq_dna;Acc:NM_029930] AK019001 , AK083917 , BC043304 , BC031718 , AK004097 , AK014379 , AK132148 , AK044692 , AK020704 , AK053509 , AK173013 6 149517037 42618001 RIKEN cDNA 3321401G04 gene 77574 mouse NM_029930 , NP_084206 Mm.398517 /// Mm.24652
1416226_at ENSMUSG00000029622 ENSMUSG00000046993 Arpc1b Actin-related protein 2/3 complex subunit 1B (Arp2/3 complex 41 kDa subunit) (p41-ARC). [Source:Uniprot/SWISSPROT;Acc:Q9WV32] AK157098 , AK005378 , AK170759 , AF162768 , AK147731 , BC092051 , AK159371 , BC010275 , AK171364 , AK148145 , AK172124 , AK002274 , AK168774 , AK167978 , BC003441 5 152537259 145875164 Actin-related protein 2/3 complex subunit 1B GO:0005856 /// GO:0042995 /// GO:0005885 /// GO:0005737 /// GO:0003779 11867 mouse PF00400 NP_075631 , NM_023142 Mm.30010
1435933_at ENSMUSG00000075318 Scn2a1 sodium channel, voltage-gated, type II, alpha 1 [Source:RefSeq_peptide;Acc:NP_001092768] L42341 , AK032187 , BX284648 , AK089150 , AJ810516 , AK038645 , AL772235 2 181748087 65458914 sodium channel, voltage-gated, type II, alpha 1 GO:0007399 /// GO:0016020 /// GO:0005245 /// GO:0016021 /// GO:0005624 /// GO:0006814 /// GO:0008076 /// GO:0005244 /// GO:0005249 /// GO:0006813 /// GO:0006816 /// GO:0006811 /// GO:0006915 /// GO:0005216 /// GO:0005509 /// GO:0001518 /// GO:0005248 /// GO:0005891 110876 mouse PF06512 /// PF00520 /// PF00612 NP_001092768 , NM_001099298 Mm.220329
1454423_at mouse 1454423_at
1416397_at ENSMUSG00000070462 Mesdc1 Mesoderm development candidate 1. [Source:Uniprot/SWISSPROT;Acc:Q9ERE8] AK162446 , AK084510 , BC018326 , AY007813 , AK089082 , AF311213 7 152524553 91030643 Mesoderm development candidate 1. 80889 mouse NP_109630 , NM_030705 Mm.272998
1419623_at ENSMUSG00000024116 Prss21 Testisin precursor (EC 3.4.21.-) (Serine protease 21) (Tryptase 4). [Source:Uniprot/SWISSPROT;Acc:Q9JHJ7] AF304012 , AB033822 , AK006271 , AY005145 , BC116757 , AF176209 , AB041645 , BC049588 , AF226710 , BC116755 , AB059415 , AB059414 17 95272651 24005053 EC 3.4.21.- Testisin precursor GO:0016020 /// GO:0005615 /// GO:0008233 /// GO:0007283 /// GO:0008236 /// GO:0048503 /// GO:0016787 /// GO:0005624 /// GO:0005886 /// GO:0004252 /// GO:0003824 /// GO:0006508 57256 mouse PF00089 PS00135 /// PS00134 NM_020487 , NP_065233 Mm.386785
1450507_at ENSMUSG00000032015 Pou2f3 POU domain, class 2, transcription factor 3 (Octamer-binding transcription factor 11) (Oct-11) (Epoc-1). [Source:Uniprot/SWISSPROT;Acc:P31362] X51960 , L14677 , Z18537 , AK153697 9 124076172 42932022 POU domain, class 2, transcription factor 3 GO:0003677 /// GO:0006355 /// GO:0005515 /// GO:0005667 /// GO:0043565 /// GO:0003700 /// GO:0005634 /// GO:0008544 /// GO:0006350 /// GO:0045449 18988 mouse PF00046 /// PF00157 PS00035 /// PS00465 /// PS00027 NM_011139 , NP_035269 Mm.436650
1453362_x_at ENSMUSG00000025290 ENSMUSG00000062284 Rps24 40S ribosomal protein S24. [Source:Uniprot/SWISSPROT;Acc:P62849] AK151111 , BC081457 , AK002986 , AK008386 , AK010856 , BC091748 , BC086882 , AK009048 , BC058817 , AK167874 , AK005358 , AK007776 , AK002495 , AK018704 , AK012537 , X71972 , AK049387 , X60289 14 125194864 25309940 40S ribosomal protein S24. GO:0005840 /// GO:0003723 /// GO:0042254 /// GO:0000166 /// GO:0005843 /// GO:0003735 /// GO:0005622 /// GO:0030529 /// GO:0006412 629116 , 677113 , 225058 , 20088 mouse PF01282 PS00529 NP_997518 , NP_997517 , NM_207634 , NM_011297 , NM_207635 , NP_035427 Mm.16775 /// Mm.459061
1437117_at ENSMUSG00000001588 Centb1 Centaurin-beta-1 (Cnt-b1) (ARFGAP with coiled-coil, ANK repeat and PH domain-containing protein 1) (ACAP1). [Source:Uniprot/SWISSPROT;Acc:Q8K2H4] BC037481 , AK154449 , AK220213 , BC031462 , AL845465 , AL596185 11 121843856 69695069 Centaurin-beta-1 GO:0008060 /// GO:0016042 /// GO:0005524 /// GO:0004629 /// GO:0005737 /// GO:0003674 /// GO:0004713 /// GO:0005515 /// GO:0016787 /// GO:0000166 /// GO:0008270 /// GO:0007242 /// GO:0004871 /// GO:0032312 /// GO:0005575 /// GO:0007165 /// GO:0004872 /// GO:0016301 /// GO:0046872 /// GO:0016740 /// GO:0008150 216859 mouse PF00023 /// PF00169 /// PF01412 NP_722483 , NM_153788
1433792_at ENSMUSG00000001520 Nrip2 NRIP2_MOUSE Isoform 2 of Q9JHR9 - Mus musculus (Mouse) [Source:Uniprot/Varsplic;Acc:Q9JHR9-2] BC094230 6 149517037 128349913 NRIP2_MOUSE Isoform 2 of Q9JHR9 - Mus musculus GO:0030528 /// GO:0000122 /// GO:0005515 /// GO:0005634 /// GO:0004190 /// GO:0006508 60345 mouse PS00141 NP_068363 , NM_021717
1428635_at ENSMUSG00000021773 Comtd1 Catechol-O-methyltransferase domain-containing protein 1 (EC 2.1.1.-). [Source:Uniprot/SWISSPROT;Acc:Q8BIG7] CT010388 , BC049670 , AY294423 , AK054334 14 125194864 22666403 EC 2.1.1.- Catechol-O-methyltransferase domain-containing protein 1 GO:0016020 /// GO:0005615 /// GO:0008168 /// GO:0008171 /// GO:0016021 /// GO:0008318 /// GO:0018342 /// GO:0016740 69156 mouse PF01596 NP_081241 , NM_026965 Mm.11827

Total number of rows: 23865

Table truncated, full table size 8121 Kbytes.




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