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Status
Public on Sep 27, 2008
Title
Illumina HumanWG-6_V2_0_R2
Technology type
oligonucleotide beads
Distribution
commercial
Organism
Homo sapiens Manufacturer
Illumina
Manufacture protocol
Randomly assembled, bead-based microarray
Description
Whole genome, 48,000 probes, 6 simultaneous samples, version 2 R2, slight differences compared to V2 R1
Web link
http://www.illumina.com Contributor(s)
Loose DS Submission date
Sep 23, 2008
Last update date
Jan 08, 2019
Contact name
GEO admin
E-mail(s)
geo@ncbi.nlm.nih.gov Organization name
NCBI/NLM/NIH
Street address
9000 Rockville Pike
City
Bethesda
State/province
MD
ZIP/Postal code
20892
Country
USA
Samples (254)
GSM328276 , GSM328278 , GSM328279 , GSM328280 , GSM328282 , GSM328283
GSM422928 ,
GSM422929 ,
GSM422930 ,
GSM422931 ,
GSM427834 ,
GSM427835 ,
GSM427836 ,
GSM427837 ,
GSM427838 ,
GSM427839 ,
GSM427840 ,
GSM427841 ,
GSM444627 ,
GSM444628 ,
GSM444629 ,
GSM444630 ,
GSM444631 ,
GSM444632 ,
GSM444633 ,
GSM444634 ,
GSM444635 ,
GSM444636 ,
GSM444637 ,
GSM444638 ,
GSM489993 ,
GSM489994 ,
GSM489995 ,
GSM489996 ,
GSM489997 ,
GSM489998 ,
GSM490000 ,
GSM490001 ,
GSM490002 ,
GSM490003 ,
GSM490004 ,
GSM490005 ,
GSM490006 ,
GSM490007 ,
GSM490008 ,
GSM490009 ,
GSM490010 ,
GSM490011 ,
GSM490012 ,
GSM490013 ,
GSM490014 ,
GSM490015 ,
GSM490016 ,
GSM490018 ,
GSM490019 ,
GSM490020 ,
GSM490021 ,
GSM490022 ,
GSM490023 ,
GSM490024 ,
GSM490025 ,
GSM490026 ,
GSM490027 ,
GSM490028 ,
GSM493884 ,
GSM493885 ,
GSM493886 ,
GSM493887 ,
GSM493888 ,
GSM493889 ,
GSM493890 ,
GSM493891 ,
GSM493892 ,
GSM493893 ,
GSM493894 ,
GSM503869 ,
GSM503870 ,
GSM503871 ,
GSM503872 ,
GSM503873 ,
GSM503874 ,
GSM523980 ,
GSM523981 ,
GSM523982 ,
GSM523983 ,
GSM523984 ,
GSM572791 ,
GSM572792 ,
GSM572793 ,
GSM572794 ,
GSM572795 ,
GSM572796 ,
GSM572797 ,
GSM572798 ,
GSM572799 ,
GSM630895 ,
GSM630896 ,
GSM630897 ,
GSM630898 ,
GSM630899 ,
GSM630900 ,
GSM630901 ,
GSM630902 ,
GSM630903 ,
GSM630904 ,
GSM630905 ,
GSM630906 ,
GSM630907 ,
GSM630908 ,
GSM630909 ,
GSM630910 ,
GSM630911 ,
GSM630912 ,
GSM630913 ,
GSM630914 ,
GSM630915 ,
GSM630916 ,
GSM897493 ,
GSM897494 ,
GSM897495 ,
GSM897496 ,
GSM897497 ,
GSM897498 ,
GSM897499 ,
GSM897500 ,
GSM897501 ,
GSM897502 ,
GSM897503 ,
GSM897504 ,
GSM897505 ,
GSM897506 ,
GSM897507 ,
GSM897508 ,
GSM897509 ,
GSM897510 ,
GSM897511 ,
GSM897512 ,
GSM897513 ,
GSM897514 ,
GSM1153935 ,
GSM1153936 ,
GSM1153937 ,
GSM1153938 ,
GSM1153939 ,
GSM1153940 ,
GSM1313390 ,
GSM1313391 ,
GSM1313392 ,
GSM1313393 ,
GSM1313394 ,
GSM1313395 ,
GSM1313396 ,
GSM1652037 ,
GSM1652038 ,
GSM1652039 ,
GSM1652040 ,
GSM1652041 ,
GSM1652042 ,
GSM1652043 ,
GSM1652044 ,
GSM1652045 ,
GSM1652046 ,
GSM1652047 ,
GSM1652048 ,
GSM1652049 ,
GSM1652050 ,
GSM1652051 ,
GSM1652052 ,
GSM1652053 ,
GSM1652054 ,
GSM1652055 ,
GSM1652056 ,
GSM1652057 ,
GSM1652058 ,
GSM1652059 ,
GSM1652060 ,
GSM1652061 ,
GSM1652062 ,
GSM1652063 ,
GSM1652064 ,
GSM1652065 ,
GSM1652066 ,
GSM1652067 ,
GSM1652068 ,
GSM1652069 ,
GSM1652070 ,
GSM1652071 ,
GSM1652072 ,
GSM1652073 ,
GSM1652074 ,
GSM1652075 ,
GSM1652076 ,
GSM1652077 ,
GSM1652078 ,
GSM1652079 ,
GSM1652080 ,
GSM1652081 ,
GSM1652082 ,
GSM1652083 ,
GSM1652084 ,
GSM1652085 ,
GSM1652086 ,
GSM1652087 ,
GSM1652088 ,
GSM1652089 ,
GSM1652090 ,
GSM1652091 ,
GSM1652092 ,
GSM1652093 ,
GSM1652094 ,
GSM1652095 ,
GSM1652096 ,
GSM1652097 ,
GSM1652098 ,
GSM1652099 ,
GSM1652100 ,
GSM1652101 ,
GSM1652102 ,
GSM1652103 ,
GSM1652104 ,
GSM1652105 ,
GSM1652106 ,
GSM1652107 ,
GSM1652108 ,
GSM1652109 ,
GSM1652110 ,
GSM1652111 ,
GSM1652112 ,
GSM1652113 ,
GSM1652114 ,
GSM1652115 ,
GSM1652116 ,
GSM1652117 ,
GSM1652118 ,
GSM1652119 ,
GSM1652120 ,
GSM1652121 ,
GSM1652122 ,
GSM1652123 ,
GSM1652124 ,
GSM1652125 ,
GSM1652126 ,
GSM1652127 ,
GSM1652128 ,
GSM1652129 ,
GSM1652130 ,
GSM1652131 ,
GSM1652132 ,
GSM1652133 ,
GSM1652134 ,
GSM1652135 ,
GSM1652136 ,
GSM1652137 ,
GSM1652138 Series (18)
GSE13119 mRNA regulation in normal or TNF-a/IL-4-activated bronchial epithelial cells (BEAS-2B)
GSE16681 mRNA expression data from differentiation of human ESCs into definitive endoderm, Cyt49 on matrigel
GSE16690 A distinct microRNA signature for definitive endoderm derived from human embryonic stem cells
GSE16877 HEK293 stably expressing Autoimmune regulator protein
GSE17053 Epigenetic environment of histone H3.3 on promoters revealed by integration of imaging, ChIP-chip, and MeDIP-chip data
GSE17820 HuR differentially regulates unique subsets of mRNAs in estrogen receptor negative and positive breast cancer
GSE19637 Incisional hernia recurrence through genomic profiling: a pilot study
GSE19773 DNA methylation in progenitor cells: expression study
GSE19795 DNA methylation in progenitor cells
GSE20134 Transcriptional analysis of time course in response to HY-PDT on human nasopharyngeal carcinoma cell line CNE-2
GSE20956 Elevated AKR1C3 expression promotes prostate cancer cell survival and prostate cell-mediated endothelial cell tube formation: Implications for prostate cancer progression
GSE25690 Global analysis of mRNA expression in prospectively purified human prostate orthotopic xenograft tumor cells with varying S/TFE
GSE25692 Expression in prospectively purified human prostate orthotopic xenograft tumor cells with varying S/TFE
GSE36610 Gene expression profiles of uterine leiomyosarcoma (ULMS)
GSE47642 Kindler syndrome microarray study
GSE54264 Expression data of Brti1 shRNA knockdown and control shRNA in MCF-10A cells
GSE54269 A Molecular Portrait of the Homologous Recombination DNA Repair via Genome-wide Transcriptome Profiling
GSE67614 Gene expression analysis in high risk head and neck squamous cell carcinoma treated with post-operative radiotherapy
Relations Alternative to
GPL6102 (official)
Data table header descriptions ID Source Transcript sequence sourcename
Search_Key Internal ID for custom array design
Transcript Internal transcript ID
ILMN_Gene Internal gene symbol
Source_Reference_ID ID in source database
RefSeq_ID Refseq ID
Unigene_ID Unigene ID
Entrez_Gene_ID Entrez gene ID
GI Genbank ID
GB_ACC GenBank Accession number
Symbol symbol from source database
Protein_Product Genbank protein accession number
Array_Address_Id decoder ID
Probe_Type Information about probe
Probe_Start position of probe relative to 5'-end of source transcript sequence
SEQUENCE Probe sequence
Chromosome Chromosome
Probe_Chr_Orientation Probe orientation on NCBI genome build
Probe_Coordinates genomic postion of probe on the NCBI genome build
Definition Gene decription from source
Ontology_Component Cellular component annotation from Gene Ontology project
Ontology_Process Biological process annotation from Gene Ontology project
Ontology_Function Molecular function annotation from Gene Ontology project
Synonyms synonyms from Refseq
Data table ID Source Search_Key Transcript ILMN_Gene Source_Reference_ID RefSeq_ID Unigene_ID Entrez_Gene_ID GI GB_ACC Symbol Protein_Product Array_Address_Id Probe_Type Probe_Start SEQUENCE Chromosome Probe_Chr_Orientation Probe_Coordinates Definition Ontology_Component Ontology_Process Ontology_Function Synonyms ILMN_1910180
Unigene
ILMN_127219
ILMN_127219
HS.575038
Hs.575038
Hs.575038
10437021
AK024680 2100682
S
1409
ACACCTTCAGGAGGGAAGCCCTTATTTCTGGGTTGAACTCCCCTTCCATG
Homo sapiens cDNA: FLJ21027 fis, clone CAE07110
ILMN_1725881
RefSeq
ILMN_44919
ILMN_44919
LOC23117
XM_933824.1
XM_933824.1
23117
89040007
XM_933824.1 LOC23117
XP_938917.1
2000349
I
122
GGCTCCTCTTTGGGCTCCTACTGGAATTTATCAGCCATCAGTGCATCTCT
16
-
21766363-21766363:21769901-21769949
PREDICTED: Homo sapiens KIAA0220-like protein, transcript variant 11 (LOC23117), mRNA.
ILMN_1804174
RefSeq
ILMN_139282
ILMN_139282
FCGR2B
XM_938851.1
XM_938851.1
2213
88952550
XM_938851.1 FCGR2B
XP_943944.1
1500347
I
1643
TAGGGGCAATAGGCTATACGCTACAGCCTAGGTGTGTAGTAGGCCACACC
PREDICTED: Homo sapiens Fc fragment of IgG, low affinity IIb, receptor (CD32) (FCGR2B), mRNA.
ILMN_1761580
RefSeq
ILMN_5006
ILMN_5006
TRIM44
NM_017583.3
NM_017583.3
54765
29029528
NM_017583.3 TRIM44
NP_060053.2
5050382
S
3104
AGGATTGTCCTGACTCACTAAAGATGCCAGGATATTGGGGCTGAGGGGAG
11
+
35786273-35786322
Homo sapiens tripartite motif-containing 44 (TRIM44), mRNA.
intracellular [goid 5622] [evidence IEA]
zinc ion binding [goid 8270] [evidence IEA]; metal ion binding [goid 46872] [evidence IEA]
MGC3490; MC7; HSA249128; DIPB
ILMN_1668162
RefSeq
ILMN_7652
ILMN_7652
DGAT2L3
NM_001013579.1
NM_001013579.1
158833
61888901
NM_001013579.1 DGAT2L3
NP_001013597.1
6480482
S
782
GTCAAGGCTCCACTGGGCTCCTGCCATACTCCAGGCCTATTGTCACTGTG
X
+
69376459-69376508
Homo sapiens diacylglycerol O-acyltransferase 2-like 3 (DGAT2L3), mRNA.
membrane [goid 16020] [evidence IEA]; integral to membrane [goid 16021] [evidence IEA]; endoplasmic reticulum [goid 5783] [evidence IEA]
lipid biosynthesis [goid 8610] [evidence IEA]; lipid metabolism [goid 6629] [evidence IEA]
acyltransferase activity [goid 8415] [evidence IEA]; transferase activity [goid 16740] [evidence IEA]
DGA2; AWAT1
ILMN_1715600
RefSeq
ILMN_35097
ILMN_35097
LOC387701
XM_373469.3
XM_373469.3
387701
89031576
XM_373469.3 LOC387701
XP_373469.1
2350164
A
301
GTCCCCAACCCTAACCCGGACCTGGCACATACAAGACATTCAGCAGATGG
10
+
92811754-92811767:92811768-92811803
PREDICTED: Homo sapiens hypothetical LOC387701 (LOC387701), mRNA.
ILMN_1912287
Unigene
ILMN_77451
ILMN_77451
HS.133181
Hs.133181
Hs.133181
27826545
BX093329 4890754
S
324
GTGCCAGCTGCCATTGCACTGCCTCACATTTTCCTTTAGATGTTTGAGCA
BX093329 Soares_parathyroid_tumor_NbHPA Homo sapiens cDNA clone IMAGp998A124183 ; IMAGE:1648403, mRNA sequence
ILMN_1793729
RefSeq
ILMN_18382
ILMN_18382
C15ORF39
NM_015492.4
NM_015492.4
56905
153251858
NM_015492.4 C15orf39
NP_056307.2
6350167
S
3585
CTTGCCTAGAGAACACACATGGGCTTTGGAGCCCGACAGACCTGGGCTTG
Homo sapiens chromosome 15 open reading frame 39 (C15orf39), mRNA.
DKFZP434H132; FLJ46337; MGC117209
ILMN_1889125
Unigene
ILMN_108888
ILMN_108888
HS.545755
Hs.545755
Hs.545755
1999235
AA346998 5420445
S
139
CTGGAAAAGCAAAATTTGGATTTGTGGTTCAATCCACCATCTTTACTCAG
EST53225 Fetal heart II Homo sapiens cDNA 3 end, mRNA sequence
ILMN_1711283
RefSeq
ILMN_12044
ILMN_22537
PCDHGA9
NM_018921.2
NM_018921.2
56107
14270485
NM_018921.2 PCDHGA9
NP_061744.1
1780707
A
2220
TGTGGGTGTAGATGGGGTTCGAGCTTTCCTACAGACCTATTCTCAGGAGT
5
+
140764923-140764972
Homo sapiens protocadherin gamma subfamily A, 9 (PCDHGA9), transcript variant 1, mRNA.
membrane [goid 16020] [evidence IEA]; integral to membrane [goid 16021] [evidence IEA]
homophilic cell adhesion [goid 7156] [evidence IEA]; cell adhesion [goid 7155] [evidence IEA]
calcium ion binding [goid 5509] [evidence IEA]; protein binding [goid 5515] [evidence IEA]
PCDH-GAMMA-A9
ILMN_1682799
RefSeq
ILMN_1387
ILMN_1387
STAMBPL1
NM_020799.2
NM_020799.2
57559
52694663
NM_020799.2 STAMBPL1
NP_065850.1
7160255
S
1746
TGTAAGCACCGTCAACATCAGACACCTACTCATGGACATGTGGTTGCCGG
10
+
90672973-90673022
Homo sapiens STAM binding protein-like 1 (STAMBPL1), mRNA.
ubiquitin cycle [goid 6512] [evidence IEA]
zinc ion binding [goid 8270] [evidence IEA]; metal ion binding [goid 46872] [evidence IEA]; metallopeptidase activity [goid 8237] [evidence IEA]; ubiquitin thiolesterase activity [goid 4221] [evidence IEA]
KIAA1373; bA399O19.2; FLJ31524; AMSH-LP; AMSH-FP; ALMalpha
ILMN_1909767
Unigene
ILMN_104330
ILMN_104330
HS.539137
Hs.539137
Hs.539137
6568782
AW236393 4150719
S
239
ACCGCAGAGCCTTTGACCTCGGTACCTCAATATGAAGATTCAGGGTCTTC
xo15e10.x1 NCI_CGAP_Ut2 Homo sapiens cDNA clone IMAGE:2704074 3, mRNA sequence
ILMN_1840770
Unigene
ILMN_88273
ILMN_88273
HS.372465
Hs.372465
Hs.372465
22919294
BU568994 1010360
S
693
TAATCAGGACCCAGCAAATTTCCCCGAAGCAATGGGGTCCCGGTGGGCTC
AGENCOURT_10400114 NIH_MGC_82 Homo sapiens cDNA clone IMAGE:6616301 5, mRNA sequence
ILMN_1906209
Unigene
ILMN_108918
ILMN_108918
HS.545796
Hs.545796
Hs.545796
6834513
AW337887 1740255
S
39
GAAAGAGATTTTGGTAGGAGAGGGCTGAGGCTGACAGCGGGGAGATGCCA
he12d07.x1 NCI_CGAP_CML1 Homo sapiens cDNA clone IMAGE:2918797 3, mRNA sequence
ILMN_1665311
RefSeq
ILMN_1785
ILMN_1785
STH
NM_001007532.1
NM_001007532.1
246744
56090268
NM_001007532.1 STH
NP_001007533.1
1050195
S
97
CAGCCTCTGTGTGAGTGGATGATTCAGGTTGCCAGAGACAGAACCCTCAG
17
+
41432579-41432628
Homo sapiens saitohin (STH), mRNA.
MGC163193; MGC163191
ILMN_1657235
RefSeq
ILMN_36381
ILMN_178946
LOC342979
XM_292820.6
XM_292820.6
342979
113428124
XM_292820.6 LOC342979
XP_292820.6
5220204
A
1452
CCACCGAGGGTGAAGAGGCAAGTGGCCCTAAGCAAAAGACGTGCCAGTGT
19
-
14025431-14025480
PREDICTED: Homo sapiens hypothetical LOC342979 (LOC342979), mRNA.
ILMN_1655444
RefSeq
ILMN_34624
ILMN_171312
LOC728492
XM_001130874.1
XM_001130874.1
728492
113416615
XM_001130874.1 LOC728492
XP_001130874.1
1740192
I
397
GATGACTGGCTATTTGGAAAACCTGGGTGCTACTGCCAACTGGGTGTATC
5
+
70239388-70239389:70239390-70239437
PREDICTED: Homo sapiens similar to small EDRK-rich factor 1A, telomeric, transcript variant 4 (LOC728492), mRNA.
ILMN_1755897
RefSeq
ILMN_22479
ILMN_179411
UGT2B7
XM_001128725.1
XM_001128725.1
7364
113416110
XM_001128725.1 UGT2B7
XP_001128725.1
2900379
A
1437
GAGCTAAACACCTTCGGGTTGCAGCCCACGACCTCACCTGGTTCCAGTAC
PREDICTED: Homo sapiens UDP glucuronosyltransferase 2 family, polypeptide B7 (UGT2B7), mRNA.
ILMN_1679194
RefSeq
ILMN_138375
ILMN_179411
UGT2B7
XM_001128725.1
XM_001128725.1
7364
113416110
XM_001128725.1 UGT2B7
XP_001128725.1
7650093
A
1441
TAAACACCTTCGGGTTGCAGCCCACGACCTCACCTGGTTCCAGTACCACT
PREDICTED: Homo sapiens UDP glucuronosyltransferase 2 family, polypeptide B7 (UGT2B7), mRNA.
ILMN_1656744
RefSeq
ILMN_33919
ILMN_33919
LOC648054
XM_937104.1
XM_937104.1
648054
89028492
XM_937104.1 LOC648054
XP_942197.1
7200546
S
1048
GACATCACTCGGTCTGTGACTTCGGTGCAATCTCCTTCAGGGAAGCCGGG
PREDICTED: Homo sapiens hypothetical protein LOC648054 (LOC648054), mRNA.
48702 19895 Kbytes .Supplementary data files not provided
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