GEO help: Mouse over screen elements for information.
Status
Public on Dec 31, 2008
Title
Agilent-015279 Mouse CpG Island ChIP-on-Chip Microarray 2x105K (Feature Number version)
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Mus musculus
Manufacturer
Agilent Technologies
Manufacture protocol
see manufacturer's web site at http://www.agilent.com/
Catalog number
G4811A
Description
Mouse CpG Island ChIP-on-Chip Microarray 2x105K Enriched content sourced from UCSC mm8, NCBI build 36 (February 2006) 16,030 CpG islands 97,652 probes in or within 95bp of CpG Islands 2 x 105K slide format printed using Agilent's 60-mer SurePrint technology To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions. *** A different version of this platform with the Agilent Probe names in the ID column is assigned accession number GPL10324.
Submission date
Jul 26, 2008
Last update date
Dec 06, 2012
Organization
Agilent Technologies
E-mail(s)
cag_sales-na@agilent.com
Phone
877-424-4536
URL
http://www.agilent.com
Department
Street address
City
Palo Alto
State/province
CA
ZIP/Postal code
94304
Country
USA
Samples (150)
GSM309425 , GSM309533 , GSM309534 , GSM309535 , GSM309536 , GSM309537
GSM309538 ,
GSM309539 ,
GSM309540 ,
GSM309541 ,
GSM309542 ,
GSM309543 ,
GSM309544 ,
GSM309545 ,
GSM309546 ,
GSM309547 ,
GSM309548 ,
GSM309549 ,
GSM309551 ,
GSM309552 ,
GSM309555 ,
GSM590172 ,
GSM590173 ,
GSM590174 ,
GSM590175 ,
GSM590176 ,
GSM590177 ,
GSM590178 ,
GSM590179 ,
GSM590180 ,
GSM590181 ,
GSM590182 ,
GSM590183 ,
GSM590184 ,
GSM590185 ,
GSM590186 ,
GSM590187 ,
GSM590188 ,
GSM590189 ,
GSM590190 ,
GSM590191 ,
GSM590192 ,
GSM590193 ,
GSM590194 ,
GSM590195 ,
GSM590196 ,
GSM590197 ,
GSM590198 ,
GSM590199 ,
GSM590200 ,
GSM590201 ,
GSM590202 ,
GSM590203 ,
GSM590204 ,
GSM590205 ,
GSM897756 ,
GSM897757 ,
GSM897758 ,
GSM897759 ,
GSM897760 ,
GSM897761 ,
GSM925049 ,
GSM925050 ,
GSM925053 ,
GSM925057 ,
GSM969965 ,
GSM969966 ,
GSM1186841 ,
GSM1186842 ,
GSM1186843 ,
GSM1186844 ,
GSM1186845 ,
GSM1186846 ,
GSM1186847 ,
GSM1186848 ,
GSM1321446 ,
GSM1321447 ,
GSM1321448 ,
GSM1321449 ,
GSM1321450 ,
GSM1321451 ,
GSM1321452 ,
GSM1321453 ,
GSM1321454 ,
GSM1321455 ,
GSM1321456 ,
GSM1321457 ,
GSM1321458 ,
GSM1321459 ,
GSM1321460 ,
GSM1321461 ,
GSM1321462 ,
GSM1321463 ,
GSM1321464 ,
GSM1321465 ,
GSM1321466 ,
GSM1321467 ,
GSM1321468 ,
GSM1321469 ,
GSM1321470 ,
GSM1321471 ,
GSM1321472 ,
GSM1321473 ,
GSM1321474 ,
GSM1321475 ,
GSM1321476 ,
GSM1321477 ,
GSM1321478 ,
GSM1321479 ,
GSM1321480 ,
GSM1321481 ,
GSM1321482 ,
GSM1321483 ,
GSM1321484 ,
GSM1321485 ,
GSM1321486 ,
GSM1321487 ,
GSM1321488 ,
GSM1564281 ,
GSM1564282 ,
GSM1564283 ,
GSM1564284 ,
GSM1564285 ,
GSM1564286 ,
GSM2208811 ,
GSM2208812 ,
GSM2208813 ,
GSM2208814 ,
GSM2208815 ,
GSM2208816 ,
GSM2208817 ,
GSM2208818 ,
GSM2208819 ,
GSM2208820 ,
GSM2491864 ,
GSM2491865 ,
GSM2491866 ,
GSM2491867 ,
GSM2491868 ,
GSM2491869 ,
GSM2491870 ,
GSM2491871 ,
GSM2491872 ,
GSM2491873 ,
GSM2491874 ,
GSM2491875 ,
GSM5381706 ,
GSM5381707 ,
GSM5381708 ,
GSM5381709
Series (14)
GSE12315
Methylation of Polycomb target genes in intestinal cancer is mediated by inflammation
GSE23953
Detection of aberrant DNA methylation in undifferentiated and differentiated mouse ES cells compared to normal tissues
GSE36633
Analysis of differential genetic expression by dietary intervention using moderate-carbohydrate restriction diet supplemented with calorie restriction mimetic multiple phytochemicals extracts(MCDmp) in B16F10 xenografted mouse model.
GSE37651
Parp-1 wildtype and deficient mouse embryonic stem cells
GSE39490
Helicobacter pylori-mediated Epigenetic Dysregulation of FOXD3 Tumor-suppressive Cascade In Gastric Carcinogenesis [ChIP]
GSE39600
Helicobacter pylori-mediated Epigenetic Dysregulation of FOXD3 Tumor-suppressive Cascade In Gastric Carcinogenesis
GSE48923
CpG island-specific demethylation pathway in ES cells
GSE54664
Detection of aberrant DNA methylation in undifferentiated and differentiated mouse ES cells compared to normal tissues
GSE64097
Murine liver tissue, Mdr2-/+ control vs Mdr2-KO
GSE83544
Contribution of Poly-unsaturated Fatty Acids on Cerebral Neurobiology: An Integrated Omics Approach with Epigenomic Focus [methylation]
GSE83545
Contribution of Poly-unsaturated Fatty Acids on Cerebral Neurobiology: An Integrated Omics Approach with Epigenomic Focus
GSE94918
Mitochondrial DNA haplotypes induce differential patterns of DNA methylation that result in differential chromosomal gene expression patterns
GSE178202
Mouse whole brain: Alteration of DNA methylation status caused by prenatal titanium dioxide nanoparticle exposure
GSE178207
Mouse whole brain: Molecular alterations caused by prenatal titanium dioxide nanoparticle exposure
Relations
Alternative to
GPL10324
Data table header descriptions
ID
Agilent feature number
COL
Column
ROW
Row
SPOT_ID
Spot identifier
CONTROL_TYPE
Control type
GB_ACC
GenBankAccession
GENE_SYMBOL
Gene Symbol
CHROMOSOMAL_LOCATION
Chromosomal Location
DESCRIPTION
Description
ACCESSION_STRING
Accession String
GB_RANGE
RefSeq location (mm8, NCBI Build 36)
Data table
ID
COL
ROW
SPOT_ID
CONTROL_TYPE
GB_ACC
GENE_SYMBOL
CHROMOSOMAL_LOCATION
DESCRIPTION
ACCESSION_STRING
GB_RANGE
1
264
398
MmCGHBrightCorner
pos
MmCGHBrightCorner
2
264
396
DarkCorner
pos
DarkCorner
3
264
394
DarkCorner
pos
DarkCorner
4
264
392
A_68_P29695815
FALSE
Entpd4
chr14:068290456-068290500
ref|NM_026174|ref|Entpd4:-36|mgc|BC043134:-50
NC_000080.4[068290456-068290500]
5
264
390
A_68_P22609956
FALSE
Cyr61
chr3:145587083-145587136
ref|NM_010516|ref|Cyr61:258|mgc|BC066019:242
NC_000069.4[145587083-145587136]
6
264
388
A_68_P25599898
FALSE
Kcnq1
chr7:143105030-143105074
ref|NM_008434|ref|Kcnq1:188409|mgc|BC055304:188364
NC_000073.4[143105030-143105074]
7
264
386
A_68_P25351156
FALSE
1810020D17Rik
chr7:097455596-097455640
ref|NM_183251|ref|1810020D17Rik:-1011|mgc|BC085127:521|mgc|BC026557:-1011|ens|ENSMUST00000072725.3:-4773
NC_000073.4[097455596-097455640]
8
264
384
A_68_P28604402
FALSE
Fos
chr12:086376124-086376177
ref|NM_010234|ref|Fos:13147|mgc|BC029814:13147
NC_000078.4[086376124-086376177]
9
264
382
A_68_P21393923
FALSE
2700094K13Rik
chr2:084471211-084471255
ref|NM_001033166|ref|2700094K13Rik:314|ref|NM_001037279:314
NC_000068.5[084471211-084471255]
10
264
380
A_68_P23229577
FALSE
Ipp
chr4:116005368-116005412
ref|NM_008389|ref|Ipp:-90|ens|ENSMUST00000030461.3:-3113
NC_000070.4[116005368-116005412]
11
264
378
A_68_P27129526
FALSE
chr10:050281109-050281153
chr10:050281109-050281153
ens|ENSMUST00000035976.3:10
NC_000076.4[050281109-050281153]
12
264
376
A_68_P23433038
FALSE
Prdm16
chr4:153479433-153479477
ref|NM_027504|ref|Prdm16:1218|mgc|BC059838:1196
NC_000070.4[153479433-153479477]
13
264
374
A_68_P25065688
FALSE
1600014C10Rik
chr7:037883384-037883435
ref|NM_028166|ref|1600014C10Rik:-9494|mgc|BC092099:-9536
NC_000073.4[037883384-037883435]
14
264
372
A_68_P29410281
FALSE
3830406C13Rik
chr14:011077258-011077317
ref|NM_146051|ref|3830406C13Rik:-188|ref|NM_178141:-188
NC_000080.4[011077258-011077317]
15
264
370
A_68_P21060552
FALSE
Pdss1
chr2:022747258-022747302
ref|NM_019501|ref|Pdss1:112|mgc|BC026820:2|ens|ENSMUST00000091396.2:103
NC_000068.5[022747258-022747302]
16
264
368
A_68_P27966234
FALSE
Tmem132e
chr11:082250604-082250648
ref|NM_023438|ref|Tmem132e:45532|ens|ENSMUST00000092852.1:45385
NC_000077.4[082250604-082250648]
17
264
366
A_68_P30778641
FALSE
2310061J03Rik
chr16:055899669-055899713
ref|NM_133677|ref|2310061J03Rik:-190|ref|NM_024218:8348|mgc|BC017620:-190
NC_000082.4[055899669-055899713]
18
264
364
A_68_P29011721
FALSE
Dek
chr13:047117039-047117083
ref|NM_025900|ref|Dek:21|mgc|BC055451:77
NC_000079.4[047117039-047117083]
19
264
362
A_68_P28520553
FALSE
Txndc1
chr12:071371757-071371801
ref|NM_028339|ref|Txndc1:21|mgc|BC017603:21
NC_000078.4[071371757-071371801]
20
264
360
A_68_P21843314
FALSE
NM_175303
Sall4
chr2:168441691-168441735
INSIDE
ref|NM_175303|ref|Sall4:16693|ref|NM_201395:16693|ens|ENSMUST00000099063.1:-1185
NC_000068.5[168441691-168441735]
Total number of rows: 105072 Table truncated, full table size 17298 Kbytes .
Supplementary data files not provided