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Platform GPL7020 Query DataSets for GPL7020
Status Public on Jul 08, 2008
Title NuGO array (human) NuGO_Hs1a520180
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Homo sapiens
Manufacturer AFFYMETRIX
Manufacture protocol See manufacturer's web site
 
Description This array has been designed by NuGO and manufactured by Affymetrix.
NuGO is a European Union-funded Network of Excellence, the full title of which is 'The European Nutrigenomics Organisation: linking genomics, nutrition and health research'. This array contains aproximately 24.000 probesets, relevant to nutrigenomics studies.
More info:
http://www.nugo.org
http://blog.bigcat.unimaas.nl/~martijn/NuGO/index.html
 
Web link http://www.nugo.org
Contributor(s) van Iersel M, Koks PD, Elliott RM, Rocca-Serra P, Hooiveld GJ
Submission date Jul 03, 2008
Last update date Mar 20, 2012
Contact name Guido Hooiveld
E-mail(s) guido.hooiveld@wur.nl
Organization name Wageningen University
Department Div. Human Nutrition & Health
Lab Nutrition, Metabolism & Genomics Group
Street address HELIX, Stippeneng 4
City Wageningen
ZIP/Postal code NL-6708WE
Country Netherlands
 
Samples (276) GSM373458, GSM373459, GSM373460, GSM373461, GSM373462, GSM373463 
Series (11)
GSE14954 A saturated fatty acid rich diet can induce an 'obese-like' gene expression profile in adipose tissue
GSE18589 Eicosapentaenoic acid improves metabolic switching in human myotubes
GSE21976 Effects of Bifidobacterium bifidum PRL2010 on gene expression in intestinal epithelial cells
Relations
Alternative to GPL7144 (Alternative CDF)
Alternative to GPL15362 (CDF: Hs_ENTREZG_14)

Data table header descriptions
ID
SPOT_ID identifies controls
Ensembl (primary) ENSEMBL GENE IDENTIFIER
Ensembl (secondary) ENSEMBL GENE IDENTIFIER
External name REPRESENTATIVE ID (RETRIEVED FROM ENSEMBL)
Description TITLE OF GENE REPRESENTED BY PROBESET (RETRIEVED FROM ENSEMBL)
GB_LIST GenBank Accession number
Chromosome Number
Chromosome Length
Chromosome Coordinate
EC ENZYME COMMISSION NUMBER
Gene name REPRESENTATIVE ID (RETRIEVED FROM ENTREZ)
Gene Ontology GENE ONTOLOGY CONSORTIUM IDENTIFIERS
Entrez ENTREZ GENE DATABASE IDENTIFIER
OMIM ONLINE MENDELIAN INHERITANCE IN MAN IDENTIFIER
Species Scientific Name GENUS AND SPECIES OF ORGANISM REPRESENTED BY PROBESET
PFAM PROTEIN FAMILY IDENTIFIER
PROSITE PROTEIN DOMAINS, FAMILIES AND FUNCTIONAL SITES IDENTIFIER
REFSEQ REFERENCE SEQUENCE IDENTIFIER
UNIGENE UNIGENE IDENTIFIER

Data table
ID SPOT_ID Ensembl (primary) Ensembl (secondary) External name Description GB_LIST Chromosome Number Chromosome Length Chromosome Coordinate EC Gene name Gene Ontology Entrez OMIM Species Scientific Name PFAM PROSITE REFSEQ UNIGENE
1007_s_at ENSG00000204580 DDR1 Epithelial discoidin domain-containing receptor 1 precursor (EC 2.7.10.1) (Epithelial discoidin domain receptor 1) (Tyrosine kinase DDR) (Discoidin receptor tyrosine kinase) (Tyrosine-protein kinase CAK) (Cell adhesion kinase) (TRK E) (Protein-tyrosine ki [Source:Uniprot/SWISSPROT;Acc:Q08345] AB103608,L11315,X99027,AB202100,X99031,Z29093,X99028,X99023,X99024,BC008716,AL662854,U48705,AB210021,X99032,X99034,BA000025,X99025,AB088102,AL773589,AK130776,X74979,BC013400,AL773541,X99033,X98208,L20817,AF353182,X99026,AL662870,L57508,X99029,X99030,BC070070 6 170899992 30956784 EC 2.7.10.1 Epithelial discoidin domain-containing receptor 1 precursor GO:0016740 /// GO:0006355 /// GO:0004714 /// GO:0005887 /// GO:0004674 /// GO:0007169 /// GO:0005634 /// GO:0005524 /// GO:0000166 /// GO:0003677 /// GO:0004872 /// GO:0004879 /// GO:0016020 /// GO:0006468 /// GO:0007155 /// GO:0004672 /// GO:0004713 780 600408 human PF00754 /// PF00069 /// PF07714 PS00239 /// PS01285 /// PS00109 /// PS01286 NP_054700 /// NP_001945 /// NM_001954 /// NM_013993 /// NP_054699 /// NM_013994 Hs.631988 /// Hs.613012
1494_f_at ENSG00000213052 ENSG00000198077 CYP2A6 Cytochrome P450 2A6 (EC 1.14.14.1) (CYPIIA6) (Coumarin 7-hydroxylase) (P450 IIA3) (CYP2A3) (P450(I)). [Source:Uniprot/SWISSPROT;Acc:P11509] X13897,BC096255,X13929,AF182275,BC096256,X13930,K03192,M33318,U22027,BC096253,AF326721,BC096254 19 63811651 46041284 EC 1.14.14.1 Cytochrome P450 2A6 GO:0050381 /// GO:0006118 /// GO:0005506 /// GO:0008389 /// GO:0020037 /// GO:0005792 /// GO:0005783 /// GO:0016712 /// GO:0004497 /// GO:0019825 /// GO:0016020 /// GO:0046872 1548 122720 human PF00067 PS00086 NP_000753 /// NM_000762 Hs.439056
1552602_at ENSG00000075429 CACNG5 Voltage-dependent calcium channel gamma-5 subunit (Neuronal voltage- gated calcium channel gamma-5 subunit). [Source:Uniprot/SWISSPROT;Acc:Q9UF02] AF361351,AF142621,AF142618,BC101607,BC101633,AF458898,AF148220,AF142620,AF142619 17 78774742 62303853 Voltage-dependent calcium channel gamma-5 subunit GO:0005244 /// GO:0005887 /// GO:0006811 /// GO:0016020 /// GO:0005624 /// GO:0006816 /// GO:0005245 /// GO:0005509 27091 606405 human PF00822 NM_145811 /// NP_055219 /// NP_665810 /// NM_014404 Hs.278907
1558541_at ENSG00000215336 CH079_HUMAN Uncharacterized protein C8orf79. [Source:Uniprot/SWISSPROT;Acc:Q8N9K7] BC035082,AK094299 8 146274826 12853522 Uncharacterized protein C8orf79. Homo sapiens Hs.635431
220102_at ENSG00000183770 FOXL2 Forkhead box protein L2. [Source:Uniprot/SWISSPROT;Acc:P58012] AY331134,DQ016593,DQ016609,AF301906,DQ089670,BC019896,BC062549,DQ089672,DQ016608 3 199501827 140147124 Forkhead box protein L2. GO:0045944 /// GO:0042309 /// GO:0042703 /// GO:0050825 /// GO:0006355 /// GO:0050826 /// GO:0005634 /// GO:0060014 /// GO:0001541 /// GO:0006917 /// GO:0002074 /// GO:0043280 /// GO:0043565 /// GO:0005515 /// GO:0048048 /// GO:0003700 /// GO:0006350 /// GO:0043028 /// GO:0019101 /// GO:0006309 668 605597 human PF00250 PS00658 /// PS00657 NP_075555 /// NM_023067 Hs.289292
220103_s_at ENSG00000163322 ENSG00000163319 CCDC98 Coiled-coil domain-containing protein 98. [Source:Uniprot/SWISSPROT;Acc:Q6UWZ7] AK022704,AY358576,BC039573,EF531340,AK023676 4 191273063 84601124 Coiled-coil domain-containing protein 98. GO:0005515 84142 human NM_139076 /// NP_620775 Hs.334772
220107_s_at ENSG00000119703 C14orf140 Uncharacterized protein C14orf140. [Source:Uniprot/SWISSPROT;Acc:Q53FD0] AK223359,BC004259,AK026746 14 106368585 74606052 Uncharacterized protein C14orf140. 79696 human NM_001042430 /// NM_024643 /// NP_001035895 /// NP_078919 Hs.626122 /// Hs.48642
220108_at ENSG00000156049 GNA14 Guanine nucleotide-binding protein alpha-14 subunit (G-protein alpha subunit 14). [Source:Uniprot/SWISSPROT;Acc:O95837] AF493903,AL355535,AL158159,AL353794,BC027886,AF105201 9 140273252 79228369 Guanine nucleotide-binding protein alpha-14 subunit GO:0003924 /// GO:0005525 /// GO:0004871 /// GO:0007186 /// GO:0000166 /// GO:0007165 /// GO:0005834 /// GO:0006471 /// GO:0019001 /// GO:0005886 9630 604397 human PF00503 NP_004288 /// NM_004297 Hs.657795
220112_at ENSG00000164512 ANKRD55 Ankyrin repeat domain-containing protein 55. [Source:Uniprot/SWISSPROT;Acc:Q3KP44] AC016638,BC106915,BC106914,AK021857,AC016585 5 180857866 55431264 Ankyrin repeat domain-containing protein 55. 79722 human PF00023 NP_078945 /// NM_001039935 /// NM_024669 /// NP_001035024 Hs.436214
220115_s_at ENSG00000040731 CDH10 Cadherin-10 precursor (T2-cadherin). [Source:Uniprot/SWISSPROT;Acc:Q9Y6N8] AB035303,AF039747 5 180857866 24522967 Cadherin-10 precursor GO:0007156 /// GO:0016021 /// GO:0005515 /// GO:0016020 /// GO:0005509 1008 604555 human PF00028 /// PF01049 PS00232 NP_006718 /// NM_006727 Hs.92489 /// Hs.609271
220116_at ENSG00000080709 KCNN2 Small conductance calcium-activated potassium channel protein 2 (SK2). [Source:Uniprot/SWISSPROT;Acc:Q9H2S1] BC117456,BC117454,AF239613,BC015371,AF397175,AY258141 5 180857866 113725565 Small conductance calcium-activated potassium channel protein 2 GO:0016021 /// GO:0008076 /// GO:0006811 /// GO:0005216 /// GO:0016286 /// GO:0005249 /// GO:0016020 /// GO:0005516 /// GO:0015269 /// GO:0006813 3781 605879 human PF03530 /// PF02888 /// PF07885 NP_067627 /// NM_021614 /// NM_170775 /// NP_740721 Hs.98280 /// Hs.606380
220118_at ENSG00000011590 ZBTB32 Zinc finger and BTB domain-containing protein 32 (Fanconi anemia zinc finger protein) (Testis zinc finger protein) (FANCC-interacting protein). [Source:Uniprot/SWISSPROT;Acc:Q9Y2Y4] BC017700,AF165097,AF130255 19 63811651 40895670 Zinc finger and BTB domain-containing protein 32 GO:0003677 /// GO:0003676 /// GO:0003704 /// GO:0046872 /// GO:0000122 /// GO:0006350 /// GO:0005515 /// GO:0005634 /// GO:0006355 /// GO:0008270 /// GO:0005622 /// GO:0003714 27033 Homo sapiens PF00651 /// PF00096 PS00028 NM_014383 /// NP_055198 Hs.99430
220119_at ENSG00000129595 EPB41L4A Band 4.1-like protein 4A (Protein NBL4). [Source:Uniprot/SWISSPROT;Acc:Q9HCS5] AK096057,BC031042,AB030240,BC114942 5 180857866 111507433 Band 4.1-like protein 4A GO:0008092 /// GO:0008150 /// GO:0005575 /// GO:0019898 /// GO:0005856 /// GO:0005198 /// GO:0005737 /// GO:0005488 64097 human PF00373 /// PF08736 PS00660 /// PS00661 NM_022140 /// NP_071423 Hs.584954 /// Hs.601810
220127_s_at ENSG00000127452 FBXL12 F-box/LRR-repeat protein 12 (F-box and leucine-rich repeat protein 12) (F-box protein FBL12). [Source:Uniprot/SWISSPROT;Acc:Q9NXK8] BC001586,AK027004,AK000195 19 63811651 9781947 F-box/LRR-repeat protein 12 GO:0005737 /// GO:0000151 /// GO:0006511 /// GO:0006512 54850 609079 Homo sapiens PF00646 NM_017703 /// NP_060173
1558552_s_at NO INFORMATION human
220129_at ENSG00000083622 SOHLH2 spermatogenesis and oogenesis specific basic helix-loop-helix 2 [Source:RefSeq_peptide;Acc:NP_060296] AY884305,AK000456,BC025383,AL160392 13 114142980 35640355 spermatogenesis and oogenesis specific basic helix-loop-helix 2 GO:0030528 /// GO:0045449 /// GO:0005634 54937 Homo sapiens PF00010 NM_017826 /// NP_060296 Hs.124519
220131_at ENSG00000126258 FXYD7 FXYD domain-containing ion transport regulator 7. [Source:Uniprot/SWISSPROT;Acc:P58549] U72245,BC032800,BC018619 19 63811651 40321572 FXYD domain-containing ion transport regulator 7. GO:0005216 /// GO:0005886 /// GO:0031404 /// GO:0006821 /// GO:0016021 /// GO:0006811 /// GO:0016020 /// GO:0005887 /// GO:0006936 /// GO:0005254 53822 /// 5348 606684 /// 602359 Homo sapiens PF02038 PS01310 NM_021902 /// NP_068702 /// NP_005022 /// NP_071289 /// NM_022006 /// NM_005031 Hs.696528
220132_s_at ENSG00000214774 ENSG00000069493 Q504R3_HUMAN BC094859 12 132349534 9713576 GO:0003676 /// GO:0005634 Homo sapiens PF03066
220133_at ENSG00000109205 ODAM odontogenic ameloblast-associated protein [Source:RefSeq_peptide;Acc:NP_060325] AK000520,BC017796,EF113908 4 191273063 71096833 odontogenic ameloblast-associated protein GO:0043205 /// GO:0042475 54959 Homo sapiens NM_017855 /// NP_060325 Hs.143811
220134_x_at ENSG00000214193 ENSG00000142694 C1orf113 C1orf113 protein (Fragment). [Source:Uniprot/SPTREMBL;Acc:A4FU49] BC036763,BC101678,BC101676,BC048273,AK026591,AK056459 1 247249719 36545305 C1orf113 protein GO:0006885 /// GO:0016021 /// GO:0015385 /// GO:0006814 79729 human NP_078952 /// NM_024676 Hs.524496

Total number of rows: 23941

Table truncated, full table size 9263 Kbytes.






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Supplementary file Size Download File type/resource
GPL7020_NuGO_Hs1a520180.cdf.gz 7.2 Mb (ftp)(http) CDF
GPL7020_NuGO_Hs1a520180_probeSequences.zip.gz 4.7 Mb (ftp)(http) ZIP

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