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Platform GPL6793 Query DataSets for GPL6793
Status Public on Apr 30, 2008
Title Rosetta/Merck Human RSTA Custom Affymetrix 1.0 microarray
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Homo sapiens
Manufacturer Affymetrix
Manufacture protocol see manufacturer web site
 
Description Contains probesets for each transcript. Probeset is made of mostly 11 distinct probes.
 
Web link http://www.rii.com
Contributor(s) Kulkarni A, Castle J
Submission date Apr 29, 2008
Last update date Jul 26, 2010
Contact name Amit V Kulkarni
E-mail(s) amit_kulkarni@merck.com
Phone 206-802-7352
Organization name Rosetta Inpharmatics / Merck Pharmaceuticals
Department Genomics
Lab Array Design
Street address 401 Terry Ave N
City Seattle
State/province WA
ZIP/Postal code 98109
Country USA
 
Samples (349) GSM298121, GSM298122, GSM353017, GSM353018, GSM353019, GSM353020 
Series (7)
GSE11778 MiR-21 Promotes Glioma Invasion by Targeting MMP Regulators.
GSE14073 microRNA-like off-target transcript regulation by siRNAs
GSE14473 Comprehensive Characterization of microRNAs and mRNAs in Maintenance and Differentiation of Human Embryonic Stem Cells
Relations
Alternative to GPL10687 (Alternative CDF)

Data table header descriptions
ID Rosetta generated unique probe identifier
ORF Entrez Gene identifier for the gene represented
GeneSymbol Gene symbol for the gene represented
GB_ACC GenBank Accession
PROBE_DERIVED_FROM_TRANSCRIPT Actual transcript sequence from which the probe was derieved
SPOT_ID
RosettaGeneModelID Rosetta internal gene identifier.

Data table
ID ORF GeneSymbol GB_ACC PROBE_DERIVED_FROM_TRANSCRIPT SPOT_ID RosettaGeneModelID
merck-NM_138384_at 92170 MTG1 NM_138384 REFSEQ HSG00267729
merck-CR595881_at 55744 C7orf44 CR595881 GENBANK HSG00249149
merck-NM_152638_at 196477 C12orf12 NM_152638 REFSEQ HSG00278208
merck-BG569935_at 8544 PIR BG569935 DBEST HSG00254935
merck-BF916910_at BF916910 DBEST HSG00455649
merck-NM_130806_at 122042 RXFP2 NM_130806 REFSEQ HSG00284728
merck-AK093604_at AK093604 GENBANK HSG00270395
merck-AK001011_at AK001011 GENBANK HSG00279841
merck-AA973783_s_at 10211 FLOT1 AA973783 DBEST HSG00460957
merck-BC065028_a_at 348995 NUP43 BC065028 GENBANK HSG00243495
merck-XM_089153_at XM_089153 REFSEQ HSG00514675
merck-AW366773_at AW366773 DBEST HSG00363011
merck-XM_104680_at XM_104680 REFSEQ HSG00511817
merck-NM_024420_at 5321 PLA2G4A NM_024420 REFSEQ HSG00208282
merck-NM_014636_at 9649 RALGPS1 NM_014636 REFSEQ HSG00355938
merck-XM_945773_at XM_945773 REFSEQ HSG00512591
merck-AK022141_at AK022141 GENBANK HSG00245749
merck-RSE_00000297615_at XM_301382 non-public HSG00277907
merck-ENST00000367801_a_at 54806 AHI1 non-public ENSEMBLE: ENST00000367801 HSG00242982
merck-BX105366_at BX105366 DBEST HSG00218940

Total number of rows: 43483

Table truncated, full table size 2566 Kbytes.




Download family Format
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Supplementary data files not provided

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