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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Apr 30, 2008 |
| Title |
Rosetta/Merck Human RSTA Custom Affymetrix 1.0 microarray |
| Technology type |
in situ oligonucleotide |
| Distribution |
custom-commercial |
| Organism |
Homo sapiens |
| Manufacturer |
Affymetrix |
| Manufacture protocol |
see manufacturer web site
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| |
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| Description |
Contains probesets for each transcript. Probeset is made of mostly 11 distinct probes.
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| Web link |
http://www.rii.com
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| Contributor(s) |
Kulkarni A, Castle J |
| Submission date |
Apr 29, 2008 |
| Last update date |
Jul 26, 2010 |
| Contact name |
Amit V Kulkarni |
| E-mail(s) |
amit_kulkarni@merck.com
|
| Phone |
206-802-7352
|
| Organization name |
Rosetta Inpharmatics / Merck Pharmaceuticals
|
| Department |
Genomics
|
| Lab |
Array Design
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| Street address |
401 Terry Ave N
|
| City |
Seattle |
| State/province |
WA |
| ZIP/Postal code |
98109 |
| Country |
USA |
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| Samples (349)
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GSM298121, GSM298122, GSM353017, GSM353018, GSM353019, GSM353020
GSM353021, GSM353022, GSM353023, GSM353024, GSM353025, GSM353026, GSM353027, GSM353028, GSM353029, GSM353030, GSM353031, GSM353032, GSM353033, GSM353034, GSM353035, GSM353036, GSM353037, GSM353038, GSM353039, GSM353040, GSM353041, GSM353042, GSM353043, GSM353044, GSM353048, GSM353049, GSM353050, GSM353051, GSM353052, GSM353053, GSM353054, GSM353055, GSM353056, GSM353057, GSM353058, GSM353059, GSM353060, GSM353061, GSM353062, GSM353063, GSM353064, GSM353065, GSM353066, GSM353067, GSM353068, GSM375854, GSM375855, GSM375856, GSM375857, GSM375858, GSM375859, GSM375860, GSM384676, GSM384677, GSM384678, GSM384679, GSM384680, GSM384681, GSM548340, GSM548341, GSM548342, GSM548343, GSM548344, GSM548345, GSM548346, GSM548347, GSM548348, GSM548349, GSM548350, GSM548351, GSM548352, GSM548353, GSM548354, GSM548355, GSM548356, GSM548357, GSM548358, GSM548359, GSM548360, GSM548361, GSM548362, GSM548363, GSM548364, GSM548365, GSM548366, GSM548367, GSM548368, GSM548369, GSM548370, GSM548371, GSM548372, GSM548373, GSM548374, GSM548375, GSM548376, GSM548377, GSM548378, GSM548379, GSM548380, GSM548381, GSM548382, GSM548383, GSM548384, GSM548385, GSM548386, GSM548387, GSM548388, GSM548389, GSM548390, GSM548391, GSM548392, GSM548393, GSM548394, GSM548395, GSM548396, GSM548397, GSM548398, GSM548399, GSM548400, GSM548401, GSM548402, GSM548403, GSM548404, GSM548405, GSM548406, GSM548407, GSM548408, GSM548409, GSM548410, GSM548411, GSM548412, GSM548413, GSM548414, GSM548415, GSM548416, GSM548417, GSM548418, GSM548419, GSM548420, GSM548421, GSM548422, GSM548423, GSM548424, GSM548425, GSM548426, GSM548427, GSM548428, GSM548429, GSM548430, GSM548431, GSM548432, GSM548433, GSM548434, GSM548435, GSM548436, GSM548437, GSM548438, GSM548439, GSM548440, GSM548441, GSM548442, GSM548443, GSM548444, GSM548445, GSM548446, GSM548447, GSM548448, GSM548449, GSM548450, GSM548451, GSM548452, GSM548453, GSM548454, GSM548455, GSM548456, GSM548457, GSM548458, GSM548459, GSM548460, GSM548461, GSM548462, GSM548463, GSM548464, GSM548465, GSM548466, GSM548467, GSM548468, GSM548469, GSM548470, GSM548471, GSM548472, GSM548473, GSM548474, GSM548475, GSM548476, GSM548477, GSM548478, GSM548479, GSM548480, GSM548481, GSM548482, GSM548483, GSM548484, GSM548485, GSM548486, GSM548487, GSM548488, GSM548489, GSM548490, GSM548491, GSM548492, GSM548493, GSM548494, GSM548495, GSM548496, GSM548497, GSM548498, GSM548499, GSM548500, GSM548501, GSM548502, GSM548503, GSM548504, GSM548505, GSM548506, GSM548507, GSM548508, GSM548509, GSM548510, GSM548511, GSM548512, GSM548513, GSM548514, GSM548515, GSM548516, GSM548517, GSM548518, GSM548519, GSM548520, GSM548521, GSM548522, GSM548523, GSM548524, GSM548525, GSM548526, GSM548527, GSM548530, GSM548531, GSM548532, GSM548533, GSM548534, GSM548535, GSM548536, GSM548537, GSM548538, GSM551204, GSM551206, GSM551208, GSM551210, GSM551212, GSM551214, GSM551216, GSM551218, GSM551220, GSM551222, GSM551224, GSM551226, GSM551228, GSM551230, GSM551232, GSM551234, GSM551236, GSM551238, GSM551240, GSM551242, GSM768183, GSM768184, GSM768185, GSM768186, GSM768187, GSM768188, GSM768189, GSM768190, GSM768191, GSM2449071, GSM2449072, GSM2449073, GSM2449074, GSM2449075, GSM2449076, GSM2449077, GSM2449078, GSM2449079, GSM2449080, GSM2449081, GSM2449082, GSM2449083, GSM2449084, GSM2449085, GSM2449086, GSM2449087, GSM2449088, GSM2449089, GSM2449090, GSM2449091, GSM2449092, GSM2449093, GSM2449094, GSM2449095, GSM2449096, GSM2449097, GSM2449098, GSM2449099, GSM2449100, GSM2449101, GSM2449102, GSM2449103, GSM2449104, GSM2449105, GSM2449106, GSM2449107, GSM2449108, GSM2449109, GSM2449110, GSM2449111, GSM2449112, GSM2449113, GSM2449114, GSM2449115, GSM2449116, GSM2449117, GSM2449118, GSM2449119, GSM2449120, GSM2449121, GSM2449122, GSM2449123, GSM2449124, GSM2449125, GSM2449126, GSM2449127, GSM2449128, GSM2449129
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| Series (7)
|
| GSE11778 |
MiR-21 Promotes Glioma Invasion by Targeting MMP Regulators. |
| GSE14073 |
microRNA-like off-target transcript regulation by siRNAs |
| GSE14473 |
Comprehensive Characterization of microRNAs and mRNAs in Maintenance and Differentiation of Human Embryonic Stem Cells |
| GSE15440 |
Identification of SULF2 as a novel transcriptional target of p53 by use of integrated genomic analyses. |
| GSE22058 |
miR-122 as a Regulator of Mitochondrial Metabolic Gene Network in Hepatocellular Carcinoma |
| GSE31002 |
Gene expression signature of c-MYC-immortalized human fibroblasts reveals loss of growth inhibitory response to TGFb |
| GSE93244 |
Expression data from transfection of 14 different antisense oligonucleotides in HuH7 cells |
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| Relations |
| Alternative to |
GPL10687 (Alternative CDF) |
| Data table header descriptions |
| ID |
Rosetta generated unique probe identifier |
| ORF |
Entrez Gene identifier for the gene represented |
| GeneSymbol |
Gene symbol for the gene represented |
| GB_ACC |
GenBank Accession |
| PROBE_DERIVED_FROM_TRANSCRIPT |
Actual transcript sequence from which the probe was derieved |
| SPOT_ID |
|
| RosettaGeneModelID |
Rosetta internal gene identifier. |
| Data table |
| ID |
ORF |
GeneSymbol |
GB_ACC |
PROBE_DERIVED_FROM_TRANSCRIPT |
SPOT_ID |
RosettaGeneModelID |
| merck-NM_138384_at |
92170 |
MTG1 |
NM_138384 |
REFSEQ |
|
HSG00267729 |
| merck-CR595881_at |
55744 |
C7orf44 |
CR595881 |
GENBANK |
|
HSG00249149 |
| merck-NM_152638_at |
196477 |
C12orf12 |
NM_152638 |
REFSEQ |
|
HSG00278208 |
| merck-BG569935_at |
8544 |
PIR |
BG569935 |
DBEST |
|
HSG00254935 |
| merck-BF916910_at |
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|
BF916910 |
DBEST |
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HSG00455649 |
| merck-NM_130806_at |
122042 |
RXFP2 |
NM_130806 |
REFSEQ |
|
HSG00284728 |
| merck-AK093604_at |
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|
AK093604 |
GENBANK |
|
HSG00270395 |
| merck-AK001011_at |
|
|
AK001011 |
GENBANK |
|
HSG00279841 |
| merck-AA973783_s_at |
10211 |
FLOT1 |
AA973783 |
DBEST |
|
HSG00460957 |
| merck-BC065028_a_at |
348995 |
NUP43 |
BC065028 |
GENBANK |
|
HSG00243495 |
| merck-XM_089153_at |
|
|
XM_089153 |
REFSEQ |
|
HSG00514675 |
| merck-AW366773_at |
|
|
AW366773 |
DBEST |
|
HSG00363011 |
| merck-XM_104680_at |
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|
XM_104680 |
REFSEQ |
|
HSG00511817 |
| merck-NM_024420_at |
5321 |
PLA2G4A |
NM_024420 |
REFSEQ |
|
HSG00208282 |
| merck-NM_014636_at |
9649 |
RALGPS1 |
NM_014636 |
REFSEQ |
|
HSG00355938 |
| merck-XM_945773_at |
|
|
XM_945773 |
REFSEQ |
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HSG00512591 |
| merck-AK022141_at |
|
|
AK022141 |
GENBANK |
|
HSG00245749 |
| merck-RSE_00000297615_at |
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XM_301382 |
non-public |
|
HSG00277907 |
| merck-ENST00000367801_a_at |
54806 |
AHI1 |
|
non-public |
ENSEMBLE: ENST00000367801 |
HSG00242982 |
| merck-BX105366_at |
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|
BX105366 |
DBEST |
|
HSG00218940 |
Total number of rows: 43483
Table truncated, full table size 2566 Kbytes.
| Supplementary data files not provided |
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