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Platform GPL6229 Query DataSets for GPL6229
Status Public on Dec 13, 2007
Title Kraus_lab Human custom PCR-based spotted microarray
Technology type spotted DNA/cDNA
Distribution non-commercial
Organism Homo sapiens
Manufacturer Cornell Microarray Facility
Manufacture protocol Spotting of PCR products on glass slides
 
Description There are two replicate regions ('Upper' and 'Lower') on the same microarray slide. The Platform data table reflects a condensed representation of the array's replicate features. The exact details of the microarray design have been published and can be found here: http://mcb.asm.org/cgi/content/full/27/14/5090?view=long&pmid=17515612 and here: http://mbg.cornell.edu/cals/mbg/research/kraus-lab/sm.cfm#kinnis
The .gal file is linked below as a Supplementary file.
 
Contributor(s) Kininis M, Chen BS, Diehl AG, Isaacs GD, Zhang T, Siepel AC, Clark AG, Kraus WL
Submission date Dec 03, 2007
Last update date Dec 13, 2007
Contact name W. Lee Kraus
E-mail(s) lee.kraus@utsouthwestern.edu
Organization name UT Southwestern Medical Center
Street address 5323 Harry Hines Blvd.
City Dallas
State/province TX
ZIP/Postal code 75390-8511
Country USA
 
Samples (18) GSM246248, GSM246250, GSM246251, GSM246252, GSM246253, GSM246254 
Series (1)
GSE9253 Genomic analyses of TF binding, histone acetylation and gene expression reveal classes of E2-regulated promoters

Data table header descriptions
ID
GENE_SYMBOL Gene symbol
GB_ACC Gene Accession numbers
SEQUENCE DNA sequence of probes spotted on the microarray
ORF Official Symbol

Data table
ID GENE_SYMBOL GB_ACC SEQUENCE ORF
A1-1 EGR3 NM_004430 gggaagcactccctttctcttaatctcggataggatcccgaacgctggagccgctgaggtagcaggggcgcaacgcacgccttccgggttccccagcagttcccgggctgcaaagggatttcgccagatgttttcaactctctttctaactgctggggtgttggagaccacttgcaaacaaccccaccccaccgcccacctctccccaatgcgctctcctaacgcaaacctcaaataaacacacacaatgagtta EGR3
A1-10 GLRB NM_000824 aaaacttgcccaggaatgtggtgagggccacatgagataaggcgagtgaaaggtgttttgcaactgtcaagttctgtacacatgttaattatgtaacagatgttaaacatagtattacctgtatgactatattgtcagtaattttgaccaatttaagcttgctcagaaagttcaggcttttagaaattggaagacccggagattaagctggatgtctgggttccaggcaaatggtgaaatgacagaaaatgtgtt GLRB
A1-11 CA12 NM_001218 ggcatgaccttggcttactgcaacctccgcctcctgggttcaagcgattccagaagagagaattcttagagtcagagggaggagtagaaggaaaaagatatttaaaaagctatgcttcaagaggacatttcatgctgtcaaaatgagactgtgaatcagaaagttctcggggaactgcaaggtgctctcaactaggggtcggttccttctcagtcatggcactgactcatctccacagggttctcacctgcggga CA12
A1-12 FOS NM_005252 ccacgctttgcactgaattagggctagaattggggatgggggtaggggcgcattccttcgggagccgaggcttaagtcctcggggtcctgtactcgatgccgtttctcctatctctgagcctcagaactgtcttcagtttccgtacaagggtaaaaaggcgctctctgccccatcccccccgacctcgggaacaagggtccgcattgaaccaggtgcgaatgttctctctcattctgcgccgttcccgcctcccc FOS
A1-13 CDC6 NM_001254 tagaactaccccgagggcacctgccctttccctgatcccgacctcagacctccagcgagctcagctcttttcccttcacttcacctcaggcctcgccggaacccgcagccttcacccagctccgctgcctcacagaccccaggcctcctcgagcaatcctcttctttccacctcctcagtgcaggatccttctcacgtctctcacacgcagcctctcggactcaccaccacaagcccctgaacaaactgcacagc CDC6
A1-14 RET NM_000323 cagcaacagcagacgcagccccgcggcaccggacgtcgccttcgccatcgcccgtgcgcgctggggccacggctggagggactgcggctagggccggcgggtctggatggcgggtgcggcgctcagtctggccgccccatccccgcccggggcgcggcggacgcgacggacactgggggcgcgacgcacgttccggggcactcagcgctgctgcgcgccctgcttcggtcgcgggactgaagcgaggtaagcgcc RET
A1-16 WISP2 NM_003881 ctcctctgcctcctctcaaaggtaaggaggcccgggccctggaatgcactgctgactatttgggtgtggagggggtggggatgtaaaatcgcagccaaggacccccttggcagaattcctccagggccccacattgggcacagtctggcccccatgcctaagcagggcttctctccctggaactcagagctgcctccggccagccctgctgtgtgacctcagatatgtgtcttgccttctctgggcctcagcatc WISP2
A1-17 RAB31 NM_006868 actacatcccctccatgtgcatttcatacactaaaggccattttgtggtggtgtggtgggttttcccagggttttctaaaatccttttcaggtacatttcctgccccgccccctgcaggtcttccaggatgcaaagccagtgtgctcactcttctcaaagtgaggtgccaggccaccgagcgtagggtccttcagcagtgcacaggatgtgggctctggcttcttcaagtaccgtggaccacggcccttgggtca RAB31
A1-18 TFF1 NM_003225 acagcacctggcacaaaacaggtgctcaaaaatatgtatgtaaaacagtggctcctggcggaggctgccagagctggctgtggccccacagagcaggaagaagcacgccttacctgtctgggcctcggccagggtgccgagggccagcatggacaccaggaccagggcgcagatcaccttgttctccatggtggccattgcctcctctctgctccaaaggcgaccccgagtcagggatgagaggccgcccgagcc TFF1
A1-19 NRIP1 NM_003489 gttttctgtggtgagtgcgatgtaactttaataaaggagtatcagtttatcaccttccatcgcaatcagagagagacgtactgttacattctgtccaagatttcttctggcaatgacaagataaatgcagtctgaccacagtgctgatcaacttctacgcaaggaggaggagaagaattccttaacacataggtctgtagcagtaagcagatagaatccttagtgaatatattccttttccttcttcatcttttg NRIP1
A1-2 GREB1 NM_014668 agccgactgaaaatacggtggccaagtggatggtgtgcttatttgcagtctaaagaaatttccttttggtcagaagatatagttcaaggagtttaaattggtgtgggaggccatcaggattcctctgagctgggctggttgggaagggaggcgtctgtggctttatttctttttcgttatctgcagatgtggcagaaaattgaggatgtggagtggagaccccagacttacttggagctggagggtctgccttgc GREB1
A1-3 AREG NM_001657 tcggctgtgagatggtgtaggtaaaattttaagtgcataatttggcaataataaatcatcaataaatattaatgttgatgaggcccctgggccacataaagaaatagggagtgaggggatttgaaattctggccacttcacagaaatgggtgggaaggggctcttgattgagatagaagcccatcctacatgaagcaattcctcattgagttctctcgtcctttatccttgttggaaacatcaggcaaagtcact AREG
A1-4 CXCL12 NM_000609 caccattgagaggtcggaagtacaaaggctacattcgcttttactgagagccgccggcgccttctgctttgtttgtacaggcgaggaaactgaggctcggctggtggcgccgtgggcttggagtccgagccacgctgactgcaaagacgggtctcattcccgcagatcgagctctgccggcggctgcgccgcaagccgggcaggtggcgagcttgagcccccacgcacagaaagcaggaccccctcggctgcctt CXCL12
A1-5 SPUVE NM_007173 agcctctctgatcctcgtgtactcattcttaaccatgtatctacagagagcaggactgaggagcataatagaaaagaatctctgaaaagcagggctcagtagctgacactacaggcatgtgccaccatgccaggctaatttttgtattgcctgcctcggcctctaaaagtggtgggatcacagacatgagctaccactcccggcctctcctcttcgactttttgagagagtttgaggatttgtatctgttttctt SPUVE
A1-7 HOXC4 NM_014620 caactcctgctcctgcattcctcctgccccttgggggccagagggtcgggaaggaagagagagatgccctcaacttctgtctctcccctcccatccccaccctccccagctgcccccagcttcggcaactccacctgggaggaaaaaaaattaaatgggggaaaaataattattaatcagattaatttaaaaaaaatactgctaatgaagggagcgcccagggcaggtttccctggcaatggttaggctcttaca HOXC4
A1-8 SIAH2 NM_005067 cacccgcttctggaacagccgctgacgcaagccccgggggcgcgcgcggacgtgacgcctggacacgtgtgcggccgcccaggcgcgcggggactggcagagccaccctgcgccggggcgctggctccgcccggctccagctggcagcgcagggggccgcctagcgccggcgcttcctgctcgggctgcgggccgggcctgcgccagtgagcatgcctggctcgctgcagccccgcggggttgtcttttctgggt SIAH2
A1-9 AP1G1 NM_001128 ctgtccaaagtgagcagggtagcccagcatgtgcatatacagtaattttgccacattccgacatcggtatgtattgtcttcttctctaaaagatgaccggattgcagcacattctttctggatcatttctcgttcttcagcttgggttcgggctgtccggatggtccggatcagctcccgcaatctgatgggggctggcatcctctggatatggaaagacattaaatagagatgttcacattttttactaccaaa AP1G1
A2-1 ABCG1 NM_004915 gtgtgagtgcacacgatgcctcactgccaggggtcaccccacaccggtgctgttgggggcgttggagtggttatctcttctttagtcctcaagctcctacctggcagagagctgcccaacaccgtcggggtggggtgggcgggaagggaagaagcagcagcaagaaagaagccccctggccctcactctccctccctggacgccccctcttcgaccccatcacacagccgcttgaggcttggaggcagtggattt ABCG1
A2-2 MMD NM_012329 gatgaatccaggtgaggagccgggagccgtgcgcttaacggcgggatttgggaacccgcttctgacacgggcagcgggaccgggacgccatccctctcaccgctggaatcgattcttgaaccgcattgatcctctgctcctcctcgggggccaggagctccgtctcgtcagcaccggcggccgggcgcgcggccctcatgggcttgggctgctccggaggccgcctgcgtgtccagcggaacccttcggccgggt MMD
A2-3 RTP801 NM_019058 cacagaagggacactcaccagctagcgcggtcagcgagaactgctaagacaagtgcgtcctgccgcttgaatgggtgtgcgaacccgtgccaaccaccgagagccgcccagacccgtcccaggtccacgctcgcacctcccccttggcctgctgcgccctagcaccagcgcggagcagcctataaggactagcgcggcgaggccacgccttctctgcgccacgacccaatccagacccgggagtgtggcccgcct RTP801

Total number of rows: 852

Table truncated, full table size 236 Kbytes.




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Supplementary file Size Download File type/resource
GPL6229.gal.gz 8.6 Kb (ftp)(http) GAL

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