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Platform GPL5668 Query DataSets for GPL5668
Status Public on May 06, 2008
Title NKI/VanSteensel_HSA_390k_7/8_v070724
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Homo sapiens
Manufacturer nimblegen
Manufacture protocol Details on the manufacture protocol can be found on http://www.nimblegen.com/technology/index.html
Catalog number 5100
Support glass
 
Description Non-repetitive part of Human chromosomes HSA10, HSA11, HSA15. Probe spacing approximately 750bp. Based on Human genome sequence NCBI 36. Platform 7 of 8, covering the whole human genome. Includes 9731 probes common to all 8 arrays of this series, used for between array normalization.
 
Web link http://www.nki.nl/nkidep/vansteensel
Contributor(s) Pagie L, Guelen L, van Steensel B
Submission date Jul 25, 2007
Last update date May 06, 2008
Contact name Bas van Steensel
E-mail(s) b.v.steensel@nki.nl
Phone + 31 20 512 2040
Fax +31 20 669 1383
URL http://www.nki.nl/nkidep/vansteensel
Organization name Netherlands Cancer Institute
Department division of Molecular Biology
Lab van Steensel group
Street address Plesmanlaan 121
City Amsterdam
ZIP/Postal code 1066 CX
Country Netherlands
 
Samples (1) GSM220164
Series (2)
GSE8854 Domain organization of human chromosomes revealed by mapping of nuclear lamina interactions
GSE51334 DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions

Data table header descriptions
ID
SEQUENCE nucleotide sequence of the oligo
SPOT_ID this array contains features with sequences corresponding to the human genome (NCBI 36) as well as different control spots
SPOT_CLASS this array contains empty spots and different classes of control spots from the manufacturer
CHROMOSOME human chromosome to which the oligo sequence maps
RANGE_START indicates the start position (relative to the RANGE_GB accession)
RANGE_END indicates the end position (relative to the RANGE_GB accession)
RANGE_GB GenBank accession number
RANGE_STRAND indicates the strand represented
X column number of feature on array
Y row number of feature on array

Data table
ID SEQUENCE SPOT_ID SPOT_CLASS CHROMOSOME RANGE_START RANGE_END RANGE_GB RANGE_STRAND X Y
5100_0704_0046 GTGGGCTATACGTAGTAGGGACTGTCTTCCAAAGAGGGTGTCATGGAGAGGGGCTACATG HUMCHR10_0000034470 10 15816065 15816125 NC_000010.9 + 704 46
5100_0706_0046 TGCATTGTGAAAGTGAAGGCAGAGACCAGAGTTACATGCCACTGCAAGCCAAGGAAAGAC HUMCHR10_0000021592 10 10555213 10555273 NC_000010.9 + 706 46
5100_0708_0046 AATGCTGATGCACAGAAGCTCAGAAGAGGCAATTGCTGCCCTACCTTCACTCTGGACCAC HUMCHR15_0000133953 15 79161716 79161776 NC_000015.8 + 708 46
5100_0710_0046 TGTAGCTTACTCATAGTCTGTGCAGTGTGAAGTGTGGCCAAAGCTGGTTTGGGGGTCAGG HUMCHR15_0000167922 15 94726722 94726782 NC_000015.8 + 710 46
5100_0712_0046 GTGACCCTAATTGAGGGGACCTGAGGAGATTGCATACTAGCATAAGGGTATGTTCAGGAC HUMCHR11_0000073227 11 34985482 34985542 NC_000011.8 + 712 46
5100_0714_0046 CCACCTGAAGCACTGTTTTGAGTATTCTGTCTTCTTGCCTCCACACTTACGAAATATACC HUMCHR15_0000082104 15 56321864 56321924 NC_000015.8 + 714 46
5100_0716_0046 ACCAGTCGAGCACTACATAGGGGCATTGTATTCTCAGAGTATCACAGCTGAAGGCACATG HUMCHR15_0000054483 15 43501509 43501569 NC_000015.8 + 716 46
5100_0718_0046 GTGGTCACAGCCTGAGGCTGCTCCCTGAGCTGACCATCGGCTACCAGAACAGTCAAGTAT HUMCHR10_0000130358 10 64062948 64063008 NC_000010.9 + 718 46
5100_0720_0046 CCAGGCATGAGGCTGTCTGTTAGGTTGAGTTCTCAGTCAAAACCATGGACAAAGGCCTCC HUMCHR10_0000160974 10 77595949 77596009 NC_000010.9 + 720 46
5100_0722_0046 TCCTGTCCCTCAGCCCATGGGCTGCAGAGGTGTGAAGAGTCGGTGGAAGTGACTGTCCCC HUMCHR10_0000262823 10 124347811 124347871 NC_000010.9 + 722 46
5100_0724_0046 TCCACAAGCATCTCATGAGCATCTATTAGAAGCTCAGCACCAACCCAAACTCTGGGAAGG HUMCHR11_0000110521 11 56403920 56403980 NC_000011.8 + 724 46
5100_0726_0046 AGCGCAGGTCGAGCAGATTCTACCGCAGCCCGTCCTGGGTCCTGTTGATGTGCTACACAT HUMCHR11_0000262664 11 125876556 125876616 NC_000011.8 + 726 46
5100_0728_0046 TCTACTGCCTCTCACTACAATTGCCTGATTTTTCAGGTAATTAAACAGAAGTGCTGCAGG HUMCHR11_0000083137 11 39932041 39932101 NC_000011.8 + 728 46
5100_0730_0046 GTCCTCCCAGTCTCCTGGGACCCTCTTGCATTCACCCCACCCACAAAGGCAGCAAAAGCC HUMCHR10_0000089914 10 43189241 43189301 NC_000010.9 + 730 46
5100_0732_0046 CTCTGACAATGAGACAAATGAGCTGAGATGGGCACACAATGACAATAAGGGTGGGAGGAG HUMCHR10_0000043626 10 20011166 20011226 NC_000010.9 + 732 46
5100_0734_0046 GGTGAGTGGCAGAGGTGAGACAGAAAACTAGTTCTGTTGACTACAAAGCCCATAGCCTTT HUMCHR11_0000044740 11 20907244 20907304 NC_000011.8 + 734 46
5100_0736_0046 AATAGCAACTATGGTAGCTGGTGGTCCTCCCCTAGCTAGTTTGCAATCTAAAGAGAGAAA HUMCHR10_0000114620 10 55957596 55957656 NC_000010.9 + 736 46
5100_0738_0046 GGCCCCTCTGGCCTTGACCTAATGTTAGCTATAAATGGATTGAACTCCCGGTAGATTGGG HUMCHR11_0000237238 11 114656949 114657009 NC_000011.8 + 738 46
5100_0740_0046 GCCTACCACAGGGCCCAGCTCAGACCCTCTGCTCAGACCCTGGCTACCCTCCCCCATCCC HUMCHR10_0000148860 10 72428252 72428312 NC_000010.9 + 740 46
5100_0742_0046 GGCAATGCGGGCACTCACGCCGTAAGAGGACCAACACATTCAACTTCCCCTACTCCAGGC HUMCHR10_0000072647 10 32610473 32610533 NC_000010.9 + 742 46

Total number of rows: 370691

Table truncated, full table size 50460 Kbytes.




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