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Platform GPL5331 Query DataSets for GPL5331
Status Public on May 04, 2010
Title Trichophyton rubrum cDNA microarray 1
Technology type spotted DNA/cDNA
Distribution non-commercial
Organism Trichophyton rubrum
Manufacturer State Key Laboratory for Molecular Virology and Genetic Engineering
Manufacture protocol PCR fragments used for printing the microarray chip were amplified from the EST library in 96-well plates using vector-PCR amplification with T7 and SP6 universal primers on the GeneAmp PCR system 9600 (Perkin Elmer, Foster City, CA). PCRs were initiated with DNA denaturation (5 min at 96 ºC) followed by annealing for 30
s at 55 ºC and extension (1 min and 30 s at 72 ºC) steps carried out for 35 cycles. PCR products were puried and dried and then resuspended with a concentration of 100 ng/ μL.
Support glass
 
Description The PCR product were spotted onto CMT-GAPSII-coated slides
(Corning Glass).
 
Contributor(s) Jin Q, Wang L, Yang L
Submission date May 28, 2007
Last update date May 04, 2010
Contact name Qi Jin
E-mail(s) zdsys@vip.sina.com
Phone 8610-67876915
Fax 8610-67877736
Organization name National Institute for Viral Disease Control and Prevention
Lab State Key Lab for Molecular Virology and Genetic Engineering
Street address No.6 Rongjing East Street, BDA
City Beijing
State/province Beijing
ZIP/Postal code 100176
Country China
 
Samples (7) GSM194698, GSM194699, GSM194700, GSM194701, GSM194702, GSM194703 
Series (1)
GSE7909 Dermatophytes CGH based on a Trichophyton rubrum cDNA microarray

Data table header descriptions
ID
Block Block number on the chip
Row The number of rows of spots contained within the grid
Column The number of columns of spots contained within the grid
GB_ACC GenBank Accession Number of spots
SPOT_ID spot identifier; identify the feature of spots without GB_ACC, control features, empty

Data table
ID Block Row Column GB_ACC SPOT_ID
1 1 1 1 --PCtrl-F4_068b_90-50ng/ul
2 1 1 2 --Ctrl-Buffer
3 1 1 3 --PCtrl-F4_068b_90-100ng/ul
4 1 1 4 --PCtrl-F4_068b_90-200ng/ul
5 1 1 5 DW681018
6 1 1 6 DW681265
7 1 1 7 DW681446
8 1 1 8 DW681884
9 1 1 9 DW682394
10 1 1 10 --empty
11 1 1 11 DW682500
12 1 1 12 DW682523
13 1 1 13 DW682584
14 1 1 14 DW682879
15 1 1 15 DW683069
16 1 1 16 DW683127
17 1 1 17 DW683158
18 1 1 18 DW683160
19 1 1 19 DW683295
20 1 1 20 DW683305

Total number of rows: 9216

Table truncated, full table size 209 Kbytes.




Download family Format
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Supplementary data files not provided

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