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Platform GPL529 Query DataSets for GPL529
Status Public on Oct 07, 2003
Title MWG Rat Liver Array
Technology type spotted oligonucleotide
Distribution commercial
Organism Rattus norvegicus
Manufacturer MWG Biotech
Manufacture protocol see manufacturer's web site
 
Description Array containing 1353 oligonucleotide probes representing rat liver genes Including 39 Replicas and 16 Arabidopsis controls. Information Sources: In NCBI/Genbank (keyword: tissue type = liver) only 272 genes had been assigned as liver specific; MWG Biotech has sequenced 1166 genes derived from libraries of liver tissue taken from 12 week old rats of different strains. Therefore, these genes, which are accessible in Genbank, could be assigned to be expressed in rat liver; Additionally, 187 genes sequenced by MWG and identified by protein homology to human or murine sequences are not accessible in Genbank (88 genes are derived from stroke-prone spontaneously hypertensive rats (SHRSP); 65 genes come from normotensive Wistar-Kyoto rats (WKY); 34 genes can be found in both strains).
 
Web link http://ecom2.mwgdna.com/services/array/download
Submission date Oct 07, 2003
Last update date Oct 16, 2012
Organization MWG Biotech
E-mail(s) array@mwgbiotech.com
Phone 1-877-MWG-BTEC
Fax 1-336-812-9983
Street address 4170 Mendenhall Oaks Parkway, Suite 160
City High Point
State/province NC
ZIP/Postal code 27265
Country USA
 
Samples (8) GSM19183, GSM19184, GSM19185, GSM19186, GSM19187, GSM19188 
Series (1)
GSE1146 Sex-dependent and growth hormone (GH)-dependent gene expression

Data table header descriptions
ID
Metarow number of subarray row
Metacolumn number of subarray column
Row number of row within subarray
Column number of column within subarray
OLIGO MWG oligo id
GB_ACC GenBank Accession Number
SPOT_ID spot identifier
Coding_region underscore value corresponds to coding region of GenBank entry
Genefunction Gene function
CLONE ID MWG-assigned id

Data table
ID Metarow Metacolumn Row Column OLIGO GB_ACC SPOT_ID Coding_region Genefunction CLONE ID
1.1.1.1 1 1 1 1 mwgratliver#0470-r1 NM_031543 NM_031543_1-r1 cytochrome p450 subfamily 2e1 ethanol-inducible; cyp2e1 NM_031543_1-r1
1.1.1.2 1 1 1 2 mwgratliver#0100 NM_031656 NM_031656_1 syntaxin-like protein 3i35; stx8 NM_031656_1
1.1.1.3 1 1 1 3 mwgratliver#0194 AF144701 AF144701_1 small zinc finger-like protein; tim13 AF144701_1
1.1.1.4 1 1 1 4 mwgratliver#0288 NM_053718 NM_053718_1 myeloidlymphoid or mixed-lineage leukemia trithorax drosophila homolog; translocated to 3; mllt3 NM_053718_1
1.1.1.5 1 1 1 5 mwgratliver#0016 J02868 J02868_1 rat cytochrome p-450 iid3 J02868_1
1.1.1.6 1 1 1 6 mwgratliver#0096 AJ243974 AJ243974_1 bm1av1; bm1 AJ243974_1
1.1.1.7 1 1 1 7 mwgratliver#0190 NM_031821 NM_031821_1 serum-inducible kinase; snk NM_031821_1
1.1.1.8 1 1 1 8 mwgratliver#0284 NM_031683 NM_031683_1 segregation of mitotic chromosomes b; smc1l1 NM_031683_1
1.1.1.9 1 1 1 9 ara-1 Arabidopsis negative control Arabidopsis negative control
1.1.1.10 1 1 1 10 mwgratliver#0092 NM_031774 NM_031774_1 rab acceptor prenylated; rabac1 NM_031774_1
1.1.1.11 1 1 1 11 mwgratliver#0186 NM_019208 NM_019208_1 multiple endocrine neoplasia 1; men1 NM_019208_1
1.1.1.12 1 1 1 12 mwgratliver#0280 M15562 M15562_1 rat mhc class ii rt1.u-d-alpha chain 3' end; M15562_1
1.1.1.13 1 1 1 13 mwgratliver#0012 NM_021671 NM_021671_1 db83; loc59303 NM_021671_1
1.1.1.14 1 1 1 14 mwgratliver#0088 AF021854 AF021854_1 peroxisomal 2,4-dienoyl coa reductase px-2,4-dcr#1 AF021854_1
1.1.1.15 1 1 1 15 mwgratliver#0470-r2 NM_031543 NM_031543_1-r2 cytochrome p450 subfamily 2e1 ethanol-inducible; cyp2e1 NM_031543_1-r2
1.1.2.1 1 1 2 1 mwgratliver#0276 NM_053814 NM_053814_1 rho interacting protein 3; rhoip3 NM_053814_1
1.1.2.2 1 1 2 2 mwgratliver#0008 NM_022706 NM_022706_1 ganglioside expression factor 2; gef2 NM_022706_1
1.1.2.3 1 1 2 3 mwgratliver#0084 NM_031714 NM_031714_1 heat-responsive protein 12; hrsp12 NM_031714_1
1.1.2.4 1 1 2 4 mwgratliver#0180 NM_032616 NM_032616_1 liver-specific bhlh-zip transcription factor; lisch7 NM_032616_1
1.1.2.5 1 1 2 5 mwgratliver#0272 NM_057152 NM_057152_1 kelch-like ech-associated protein 1; keap1 NM_057152_1

Total number of rows: 1440

Table truncated, full table size 163 Kbytes.






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