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Status
Public on Sep 23, 2003
Title
MWG Rat 5K Array
Technology type
spotted oligonucleotide
Distribution
commercial
Organism
Rattus norvegicus Manufacturer
MWG Biotech
Manufacture protocol
see manufacturer's web site
Description
The MWG Rat 5k Array is comprised of 5760 50-mer oligonucleotides, representing 5,535 rat genes, spotted onto one glass array. The selected genes cover all non-redundant, annotated rat coding sequences in NCBI's GenBank (release 123.0).
Web link
http://ecom2.mwgdna.com/services/array/download Submission date
Sep 19, 2003
Last update date
May 31, 2005
Organization
MWG Biotech
E-mail(s)
array@mwgbiotech.com Phone
1-877-MWG-BTEC
Fax
1-336-812-9983
Street address
4170 Mendenhall Oaks Parkway, Suite 160
City
High Point
State/province
NC
ZIP/Postal code
27265
Country
USA
Samples (12)
GSM19175 , GSM19176 , GSM19177 , GSM19178 , GSM19179 , GSM19180
Series (3)
GSE1146 Sex-dependent and growth hormone (GH)-dependent gene expression
GSE1341 Li-treatment-induced NDI (Li-NDI) in rats
GSE4575 Gene expression in degenerated rat supraspinatus tendon
Data table header descriptions ID Metarow number of subarray row
Metacolumn number of subarray column
Row number of row within subarray
Column number of column within subarray
Oligo MWG oligo id
GB_ACC GenBank Accession Number
SPOT_ID spot identifier
Coding_region underscore value corresponds to coding region of GenBank entry
Genefunction Gene function
CLONE ID MWG-assigned id
Data table ID Metarow Metacolumn Row Column Oligo GB_ACC SPOT_ID Coding_region Genefunction CLONE ID 1.1.1.1
1
1
1
1
mwgrat5K#5225-r1
NM_053986 NM_053986_1
myosin i heavy chain myr1; ib myo1b
NM_053986_1
1.1.1.2
1
1
1
2
mwgrat5K#2055
NM_030838 NM_030838_1
organic anion transporting polypeptide 3 slc21a7; transporter protein
NM_030838_1
1.1.1.3
1
1
1
3
mwgrat5K#2294
M25823 M25823_1
leukocyte-common antigen precursor; leukocyte common; l-ca variant 4
M25823_1
1.1.1.4
1
1
1
4
2ara
Arabidopsis negative control
Arabidopsis negative control
1.1.1.5
1
1
1
5
mwgrat5K#4192
AF046886 AF046886_1
axl receptor tyrosine kinase
AF046886_1
1.1.1.6
1
1
1
6
mwgrat5K#4252
S48142 S48142_1
t-kininogenase
S48142_1
1.1.1.7
1
1
1
7
mwgrat5K#1843
U60562 U60562_1
amelogenin
U60562_1
1.1.1.8
1
1
1
8
mwgrat5K#2133
AF054144 AF054144_1
t-cell receptor beta-chain tcrb
AF054144_1
1.1.1.9
1
1
1
9
mwgrat5K#4619
AF027331 AF027331_1
glutamate receptor subunit kainate subtype glur7; glur7b
AF027331_1
1.1.1.10
1
1
1
10
mwgrat5K#5158
M35602 M35602_1
beta-fibrinogen
M35602_1
1.1.1.11
1
1
1
11
mwgrat5K#1909
NM_053295 NM_053295_1
calpastatin probably multiple splicing products cast
NM_053295_1
1.1.1.12
1
1
1
12
mwgrat5K#2320
NM_053655 NM_053655_1
dlp1 splice variant 1 dlp1; dynamin-like protein; 2; 3; dynamin 1-like dnm1l
NM_053655_1
1.1.1.13
1
1
1
13
mwgrat5K#4795
NM_031235 NM_031235_1
three-pdz containing protein c. elegans par3 partitioning defect par3; atypical pkc specific binding asbp
NM_031235_1
1.1.1.14
1
1
1
14
mwgrat5K#1861
NM_031596 NM_031596_1
squamous cell carcinoma antigen recognized by t-cells sart1; rsalt-1 806
NM_031596_1
1.1.1.15
1
1
1
15
mwgrat5K#5377-r1
NM_017314 NM_017314_1
polyubiquitin ubc; ubiquitin c
NM_017314_1
1.1.2.1
1
1
2
1
mwgrat5K#2368
Z15158 Z15158_1
camp responsive-element modulator crem
Z15158_1
1.1.2.2
1
1
2
2
mwgrat5K#4727
NM_017224 NM_017224_1
multispecific organic anion transporter oat1; renal 1 roat1; cationic transporter-like orctl1
NM_017224_1
1.1.2.3
1
1
2
3
mwgrat5K#3439
AB013294 AB013294_1
hair keratin a1 hka1
AB013294_1
1.1.2.4
1
1
2
4
mwgrat5K#4636
NM_021771 NM_021771_1
ion channel protein trpc3
NM_021771_1
1.1.2.5
1
1
2
5
mwgrat5K#1035
AB030700 AB030700_1
uridine kinase uk
AB030700_1
5760 644 Kbytes .Supplementary data files not provided
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