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Platform GPL4861 Query DataSets for GPL4861
Status Public on Mar 01, 2007
Title Swegene Human 27K RAP (positions from file)
Technology type spotted DNA/cDNA
Distribution non-commercial
Organism Homo sapiens
Manufacturer Swegene DNA Microarray Resource Centre
Manufacture protocol Arrays were produced by the Swegene DNA micro array resource center at Lund University by using amplified cDNA targets from Research Genetics clones. Target amplification was performed using PCR and cDNA products were verified by agarose gel electrophoresis and purified by size-exclusion filtration. After purification, cDNA was recovered in water, adjusted to 50% DMSO and printed on amino-silane-coated glass slides (UltraGAPS from Corning) using a MicroGrid2 robot (BioRobotics) equipped with MicroSpot2500 pins (BioRobotics).
Support glass
Coating aminosilane
 
 
Web link http://swegene.onk.lu.se
Contributor(s) Borg A
Submission date Feb 28, 2007
Last update date Mar 01, 2007
Contact name Johan Staaf
Organization name SCIBLU - Swegene Centre for Integrative Biology at Lund University
Street address Medicon Village
City Lund
ZIP/Postal code SE-223 81
Country Sweden
 
Samples (199) GSM172593, GSM172594, GSM172595, GSM172596, GSM172597, GSM172598 
Series (2)
GSE7186 Microarray-based classification of a consecutive series of 121 childhood acute leukemias
GSE10283 BCR/ABL1-Dependent Transcriptional Response Reveals Enrichment for Genes Involved in Negative Feedback Regulation

Data table header descriptions
ID
ReporterID Brief probe ID/name, e.g. ID for the cDNA clone used to produce probe
TYPE Probe type, e.g. cDNA_clone for probes derived from a cDNA clone
CLONE_ID IMAGE clone identifier
SPOT_ID spot identifier
ARRAY_BLOCK Array block number, i.e. a number from 1 to 48
ARRAY_COLUMN Column within array block
ARRAY_ROW Row within array block

Data table
ID ReporterID TYPE CLONE_ID SPOT_ID ARRAY_BLOCK ARRAY_COLUMN ARRAY_ROW
1 B-actin_1/4 cDNA_landinglight IMAGE:2580289 1 1 1
2 B-actin_1/8 cDNA_landinglight IMAGE:2580289 1 2 1
3 BC DDP 2 E12 cDNA_clone BC DDP 2 E12 1 3 1
4 BC DDP 2 G12 cDNA_clone BC DDP 2 G12 1 4 1
5 BC TAX 1 A06 cDNA_clone BC TAX 1 A06 1 5 1
6 BC TAX 1 C06 cDNA_clone BC TAX 1 C06 1 6 1
7 BC TAX 1 E06 cDNA_clone BC TAX 1 E06 1 7 1
8 BC TAX 1 G06 cDNA_clone BC TAX 1 G06 1 8 1
9 BC TAX 1 A12 cDNA_clone BC TAX 1 A12 1 9 1
10 BC TAX 1 C12 cDNA_clone BC TAX 1 C12 1 10 1
11 BC TAX 1 E12 cDNA_clone BC TAX 1 E12 1 11 1
12 BC TAX 1 G12 cDNA_clone BC TAX 1 G12 1 12 1
13 BC TAX 5 A06 cDNA_clone BC TAX 5 A06 1 13 1
14 BC TAX 5 C06 cDNA_clone BC TAX 5 C06 1 14 1
15 BC TAX 5 E06 cDNA_clone BC TAX 5 E06 1 15 1
16 BC TAX 5 G06 cDNA_clone BC TAX 5 G06 1 16 1
17 BC TAX 5 A12 cDNA_clone BC TAX 5 A12 1 17 1
18 BC TAX 5 C12 cDNA_clone BC TAX 5 C12 1 18 1
19 BC TAX 5 E12 cDNA_clone BC TAX 5 E12 1 19 1
20 BC TAX 5 G12 cDNA_clone BC TAX 5 G12 1 20 1

Total number of rows: 27498

Table truncated, full table size 1243 Kbytes.






Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary data files not provided

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